File: infile.xml seed: 1651398828749 threads: 1 Loading package SNAPP v1.5.2 Loading package BDSKY v1.4.7 Loading package NS v1.1.0 Loading package substBMA v1.2.3 Loading package CA v2.0.0 Loading package PIQMEE v1.0.2 Loading package TreeStat2 v0.0.2 Loading package starbeast3 v1.0.4 Loading package Mascot v2.1.2 Loading package CoupledMCMC v1.0.2 Loading package SA v2.0.2 Loading package MODEL_SELECTION v1.5.3 Loading package BADTRIP v1.0.0 Loading package Babel v0.3.2 Loading package MGSM v0.3.0 Loading package CoalRe v0.0.7 Loading package snapper v1.0.2 Loading package phylodynamics v1.3.0 Loading package SpeciesNetwork v0.13.0 Loading package feast v7.10.0 Loading package starbeast2 v0.15.13 Loading package EpiInf v7.5.2 Loading package DENIM v1.0.1 Loading package ORC v1.0.3 Loading package PoMo v1.0.1 Loading package TMA v1.0.0 Loading package outercore v0.0.4 Loading package Beasy v0.0.2 Loading package BEASTvntr v0.1.3 Loading package flc v1.1.0 Loading package MASTER v6.1.2 Loading package BEASTLabs v1.9.7 Loading package BEAST_CLASSIC v1.5.0 Loading package FastRelaxedClockLogNormal v1.1.1 Loading package CodonSubstModels v1.1.3 Loading package STACEY v1.2.5 Loading package BEAST v2.6.6 Loading package besp v0.2.0 Loading package SCOTTI v2.0.1 Loading package BDMM v1.0 Loading package BASTA v3.0.1 Loading package OBAMA v0.2.0 Loading package MultiTypeTree v7.0.2 Loading package bModelTest v1.2.1 Loading package SSM v1.1.0 Loading package MM v1.1.1 Loading package BEAST v2.6.6 Ignoring ambiguities in tree likelihood. Ignoring character uncertainty in tree likelihood. With 10264 unique site patterns. Using rescaling scheme : dynamic Operator Tuning #accept #reject Pr(m) Pr(acc|m) ScaleOperator(YuleBirthRateScaler.t:31) 0.37794 960726 2763026 0.02664 0.25800 ScaleOperator(YuleModelTreeScaler.t:31) 0.93945 378503 3342399 0.02664 0.10172 ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91988 326958 3392985 0.02664 0.08789 Try setting scaleFactor to about 0.959 Uniform(YuleModelUniformOperator.t:31) - 2172962 35038212 0.26643 0.05840 SubtreeSlide(YuleModelSubtreeSlide.t:31) 2.50008 3388900 15212096 0.13321 0.18219 Exchange(YuleModelNarrow.t:31) - 50985 18551358 0.13321 0.00274 Exchange(YuleModelWide.t:31) - 260 3723597 0.02664 0.00007 WilsonBalding(YuleModelWilsonBalding.t:31) - 123 3718009 0.02664 0.00003 DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00802 27702 96502 0.00089 0.22304 ScaleOperator(RateACScaler.s:31) 0.86511 16575 107014 0.00089 0.13411 ScaleOperator(RateAGScaler.s:31) 0.86967 14691 108967 0.00089 0.11880 ScaleOperator(RateATScaler.s:31) 0.80307 20022 104370 0.00089 0.16096 ScaleOperator(RateCGScaler.s:31) 0.82362 20944 102685 0.00089 0.16941 ScaleOperator(RateGTScaler.s:31) 0.84833 16882 107387 0.00089 0.13585 ScaleOperator(ucldMeanScaler.c:31) 0.92546 117374 1122668 0.00888 0.09465 Try setting scaleFactor to about 0.962 ScaleOperator(ucldStdevScaler.c:31) 0.92753 445276 3275037 0.02664 0.11969 IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 4635606 7755956 0.08881 0.37409 SwapOperator(CategoriesSwapOperator.c:31) - 525752 11872688 0.08881 0.04240 UniformOperator(CategoriesUniform.c:31) - 894824 11504971 0.08881 0.07216 UpDownOperator(relaxedUpDownOperator.c:31) 0.88641 669875 3050133 0.02664 0.18007 Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized. #accept: The total number of times a proposal by this operator has been accepted. #reject: The total number of times a proposal by this operator has been rejected. Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight). Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator). srun: Job step aborted: Waiting up to 32 seconds for job step to finish. slurmstepd: error: *** STEP 11773494.0 ON exp-4-58 CANCELLED AT 2022-05-01T03:23:44 DUE TO TIME LIMIT ***