File: infile.xml seed: 1651317934969 threads: 1 Loading package SNAPP v1.5.2 Loading package BDSKY v1.4.7 Loading package NS v1.1.0 Loading package substBMA v1.2.3 Loading package CA v2.0.0 Loading package PIQMEE v1.0.2 Loading package TreeStat2 v0.0.2 Loading package starbeast3 v1.0.3 Loading package Mascot v2.1.2 Loading package CoupledMCMC v1.0.2 Loading package SA v2.0.2 Loading package MODEL_SELECTION v1.5.3 Loading package BADTRIP v1.0.0 Loading package Babel v0.3.2 Loading package MGSM v0.3.0 Loading package CoalRe v0.0.7 Loading package snapper v1.0.2 Loading package phylodynamics v1.3.0 Loading package SpeciesNetwork v0.13.0 Loading package feast v7.10.0 Loading package starbeast2 v0.15.13 Loading package EpiInf v7.5.2 Loading package DENIM v1.0.1 Loading package ORC v1.0.3 Loading package PoMo v1.0.1 Loading package TMA v1.0.0 Loading package outercore v0.0.4 Loading package Beasy v0.0.2 Loading package BEASTvntr v0.1.3 Loading package flc v1.1.0 Loading package MASTER v6.1.2 Loading package BEASTLabs v1.9.7 Loading package BEAST_CLASSIC v1.5.0 Loading package FastRelaxedClockLogNormal v1.1.1 Loading package CodonSubstModels v1.1.3 Loading package STACEY v1.2.5 Loading package BEAST v2.6.6 Loading package besp v0.2.0 Loading package SCOTTI v2.0.1 Loading package BDMM v1.0 Loading package BASTA v3.0.1 Loading package OBAMA v0.2.0 Loading package MultiTypeTree v7.0.2 Loading package bModelTest v1.2.1 Loading package SSM v1.1.0 Loading package MM v1.1.1 Loading package BEAST v2.6.6 Ignoring ambiguities in tree likelihood. Ignoring character uncertainty in tree likelihood. With 10264 unique site patterns. Using rescaling scheme : dynamic Operator Tuning #accept #reject Pr(m) Pr(acc|m) ScaleOperator(YuleBirthRateScaler.t:31) 0.37079 1431573 4285925 0.02664 0.25038 ScaleOperator(YuleModelTreeScaler.t:31) 0.94082 586522 5131679 0.02664 0.10257 ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91202 508952 5210592 0.02664 0.08898 Try setting scaleFactor to about 0.955 Uniform(YuleModelUniformOperator.t:31) - 3313663 53851452 0.26643 0.05797 SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.37859 18119861 10464224 0.13321 0.63391 Try increasing size to about 0.757 Exchange(YuleModelNarrow.t:31) - 71619 28510776 0.13321 0.00251 Exchange(YuleModelWide.t:31) - 356 5721656 0.02664 0.00006 WilsonBalding(YuleModelWilsonBalding.t:31) - 259 5719104 0.02664 0.00005 DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00902 37072 153706 0.00089 0.19432 ScaleOperator(RateACScaler.s:31) 0.85204 22929 167421 0.00089 0.12046 ScaleOperator(RateAGScaler.s:31) 0.86748 22498 169060 0.00089 0.11745 ScaleOperator(RateATScaler.s:31) 0.76229 24052 165871 0.00089 0.12664 ScaleOperator(RateCGScaler.s:31) 0.78564 25145 165150 0.00089 0.13214 ScaleOperator(RateGTScaler.s:31) 0.80917 19134 170862 0.00089 0.10071 ScaleOperator(ucldMeanScaler.c:31) 0.93012 193333 1711483 0.00888 0.10150 ScaleOperator(ucldStdevScaler.c:31) 0.95038 997739 4722500 0.02664 0.17442 IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 6920262 12128884 0.08881 0.36328 SwapOperator(CategoriesSwapOperator.c:31) - 797670 18254725 0.08881 0.04187 UniformOperator(CategoriesUniform.c:31) - 1343544 17709819 0.08881 0.07051 UpDownOperator(relaxedUpDownOperator.c:31) 0.89770 1062569 4651359 0.02664 0.18596 Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized. #accept: The total number of times a proposal by this operator has been accepted. #reject: The total number of times a proposal by this operator has been rejected. Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight). Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator). srun: Job step aborted: Waiting up to 32 seconds for job step to finish. slurmstepd: error: *** STEP 11757698.0 ON exp-5-58 CANCELLED AT 2022-04-30T04:55:39 DUE TO TIME LIMIT ***