File: infile.xml seed: 1651364047581 threads: 1 Loading package SNAPP v1.5.2 Loading package BDSKY v1.4.7 Loading package NS v1.1.0 Loading package substBMA v1.2.3 Loading package CA v2.0.0 Loading package PIQMEE v1.0.2 Loading package TreeStat2 v0.0.2 Loading package starbeast3 v1.0.4 Loading package Mascot v2.1.2 Loading package CoupledMCMC v1.0.2 Loading package SA v2.0.2 Loading package MODEL_SELECTION v1.5.3 Loading package BADTRIP v1.0.0 Loading package Babel v0.3.2 Loading package MGSM v0.3.0 Loading package CoalRe v0.0.7 Loading package snapper v1.0.2 Loading package phylodynamics v1.3.0 Loading package SpeciesNetwork v0.13.0 Loading package feast v7.10.0 Loading package starbeast2 v0.15.13 Loading package EpiInf v7.5.2 Loading package DENIM v1.0.1 Loading package ORC v1.0.3 Loading package PoMo v1.0.1 Loading package TMA v1.0.0 Loading package outercore v0.0.4 Loading package Beasy v0.0.2 Loading package BEASTvntr v0.1.3 Loading package flc v1.1.0 Loading package MASTER v6.1.2 Loading package BEASTLabs v1.9.7 Loading package BEAST_CLASSIC v1.5.0 Loading package FastRelaxedClockLogNormal v1.1.1 Loading package CodonSubstModels v1.1.3 Loading package STACEY v1.2.5 Loading package BEAST v2.6.6 Loading package besp v0.2.0 Loading package SCOTTI v2.0.1 Loading package BDMM v1.0 Loading package BASTA v3.0.1 Loading package OBAMA v0.2.0 Loading package MultiTypeTree v7.0.2 Loading package bModelTest v1.2.1 Loading package SSM v1.1.0 Loading package MM v1.1.1 Loading package BEAST v2.6.6 Ignoring ambiguities in tree likelihood. Ignoring character uncertainty in tree likelihood. With 10264 unique site patterns. Using rescaling scheme : dynamic Operator Tuning #accept #reject Pr(m) Pr(acc|m) ScaleOperator(YuleBirthRateScaler.t:31) 0.37017 1787856 5378008 0.02664 0.24950 ScaleOperator(YuleModelTreeScaler.t:31) 0.94226 757021 6408641 0.02664 0.10565 ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91388 633073 6535016 0.02664 0.08832 Try setting scaleFactor to about 0.956 Uniform(YuleModelUniformOperator.t:31) - 4170669 67483819 0.26643 0.05821 SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.41345 22635763 13192088 0.13321 0.63179 Try increasing size to about 0.827 Exchange(YuleModelNarrow.t:31) - 93830 35735810 0.13321 0.00262 Exchange(YuleModelWide.t:31) - 484 7170461 0.02664 0.00007 WilsonBalding(YuleModelWilsonBalding.t:31) - 313 7167894 0.02664 0.00004 DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00895 46802 192411 0.00089 0.19565 ScaleOperator(RateACScaler.s:31) 0.85484 29402 209089 0.00089 0.12328 ScaleOperator(RateAGScaler.s:31) 0.87004 28954 210685 0.00089 0.12082 ScaleOperator(RateATScaler.s:31) 0.76605 31000 207199 0.00089 0.13014 ScaleOperator(RateCGScaler.s:31) 0.78903 32101 206182 0.00089 0.13472 ScaleOperator(RateGTScaler.s:31) 0.81326 24797 213664 0.00089 0.10399 ScaleOperator(ucldMeanScaler.c:31) 0.93184 249115 2138550 0.00888 0.10433 ScaleOperator(ucldStdevScaler.c:31) 0.95069 1293510 5876455 0.02664 0.18041 IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 8742008 15136287 0.08881 0.36611 SwapOperator(CategoriesSwapOperator.c:31) - 1006408 22876724 0.08881 0.04214 UniformOperator(CategoriesUniform.c:31) - 1700569 22182150 0.08881 0.07120 UpDownOperator(relaxedUpDownOperator.c:31) 0.89844 1349760 5810432 0.02664 0.18851 Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized. #accept: The total number of times a proposal by this operator has been accepted. #reject: The total number of times a proposal by this operator has been rejected. Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight). Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator). srun: Job step aborted: Waiting up to 32 seconds for job step to finish. slurmstepd: error: *** STEP 11766340.0 ON exp-2-60 CANCELLED AT 2022-04-30T17:44:22 DUE TO TIME LIMIT ***