File: infile.xml seed: 1651395058578 threads: 1 Loading package SNAPP v1.5.2 Loading package BDSKY v1.4.7 Loading package NS v1.1.0 Loading package substBMA v1.2.3 Loading package CA v2.0.0 Loading package PIQMEE v1.0.2 Loading package TreeStat2 v0.0.2 Loading package starbeast3 v1.0.4 Loading package Mascot v2.1.2 Loading package CoupledMCMC v1.0.2 Loading package SA v2.0.2 Loading package MODEL_SELECTION v1.5.3 Loading package BADTRIP v1.0.0 Loading package Babel v0.3.2 Loading package MGSM v0.3.0 Loading package CoalRe v0.0.7 Loading package snapper v1.0.2 Loading package phylodynamics v1.3.0 Loading package SpeciesNetwork v0.13.0 Loading package feast v7.10.0 Loading package starbeast2 v0.15.13 Loading package EpiInf v7.5.2 Loading package DENIM v1.0.1 Loading package ORC v1.0.3 Loading package PoMo v1.0.1 Loading package TMA v1.0.0 Loading package outercore v0.0.4 Loading package Beasy v0.0.2 Loading package BEASTvntr v0.1.3 Loading package flc v1.1.0 Loading package MASTER v6.1.2 Loading package BEASTLabs v1.9.7 Loading package BEAST_CLASSIC v1.5.0 Loading package FastRelaxedClockLogNormal v1.1.1 Loading package CodonSubstModels v1.1.3 Loading package STACEY v1.2.5 Loading package BEAST v2.6.6 Loading package besp v0.2.0 Loading package SCOTTI v2.0.1 Loading package BDMM v1.0 Loading package BASTA v3.0.1 Loading package OBAMA v0.2.0 Loading package MultiTypeTree v7.0.2 Loading package bModelTest v1.2.1 Loading package SSM v1.1.0 Loading package MM v1.1.1 Loading package BEAST v2.6.6 Ignoring ambiguities in tree likelihood. Ignoring character uncertainty in tree likelihood. With 10264 unique site patterns. Using rescaling scheme : dynamic Operator Tuning #accept #reject Pr(m) Pr(acc|m) ScaleOperator(YuleBirthRateScaler.t:31) 0.37895 772326 2209606 0.02664 0.25900 ScaleOperator(YuleModelTreeScaler.t:31) 0.93789 295663 2683817 0.02664 0.09923 Try setting scaleFactor to about 0.968 ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91801 256965 2721452 0.02664 0.08628 Try setting scaleFactor to about 0.958 Uniform(YuleModelUniformOperator.t:31) - 1738118 28066576 0.26643 0.05832 SubtreeSlide(YuleModelSubtreeSlide.t:31) 2.53076 2741290 12157611 0.13321 0.18399 Exchange(YuleModelNarrow.t:31) - 38875 14862744 0.13321 0.00261 Exchange(YuleModelWide.t:31) - 190 2982104 0.02664 0.00006 WilsonBalding(YuleModelWilsonBalding.t:31) - 96 2979291 0.02664 0.00003 DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00804 22094 77277 0.00089 0.22234 ScaleOperator(RateACScaler.s:31) 0.86289 12955 86171 0.00089 0.13069 ScaleOperator(RateAGScaler.s:31) 0.86713 11411 87784 0.00089 0.11504 ScaleOperator(RateATScaler.s:31) 0.80076 15824 83732 0.00089 0.15895 ScaleOperator(RateCGScaler.s:31) 0.82178 16669 82653 0.00089 0.16783 ScaleOperator(RateGTScaler.s:31) 0.84581 13282 86364 0.00089 0.13329 ScaleOperator(ucldMeanScaler.c:31) 0.92347 91370 902113 0.00888 0.09197 Try setting scaleFactor to about 0.961 ScaleOperator(ucldStdevScaler.c:31) 0.92596 349268 2632658 0.02664 0.11713 IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 3706675 6219227 0.08881 0.37343 SwapOperator(CategoriesSwapOperator.c:31) - 419658 9512784 0.08881 0.04225 UniformOperator(CategoriesUniform.c:31) - 714393 9219627 0.08881 0.07191 UpDownOperator(relaxedUpDownOperator.c:31) 0.88503 541278 2438009 0.02664 0.18168 Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized. #accept: The total number of times a proposal by this operator has been accepted. #reject: The total number of times a proposal by this operator has been rejected. Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight). Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator). srun: Job step aborted: Waiting up to 32 seconds for job step to finish. slurmstepd: error: *** STEP 11772403.0 ON exp-4-60 CANCELLED AT 2022-05-01T02:21:13 DUE TO TIME LIMIT ***