File: infile.xml seed: 1651314467854 threads: 1 Loading package SNAPP v1.5.2 Loading package BDSKY v1.4.7 Loading package NS v1.1.0 Loading package substBMA v1.2.3 Loading package CA v2.0.0 Loading package PIQMEE v1.0.2 Loading package TreeStat2 v0.0.2 Loading package starbeast3 v1.0.3 Loading package Mascot v2.1.2 Loading package CoupledMCMC v1.0.2 Loading package SA v2.0.2 Loading package MODEL_SELECTION v1.5.3 Loading package BADTRIP v1.0.0 Loading package Babel v0.3.2 Loading package MGSM v0.3.0 Loading package CoalRe v0.0.7 Loading package snapper v1.0.2 Loading package phylodynamics v1.3.0 Loading package SpeciesNetwork v0.13.0 Loading package feast v7.10.0 Loading package starbeast2 v0.15.13 Loading package EpiInf v7.5.2 Loading package DENIM v1.0.1 Loading package ORC v1.0.3 Loading package PoMo v1.0.1 Loading package TMA v1.0.0 Loading package outercore v0.0.4 Loading package Beasy v0.0.2 Loading package BEASTvntr v0.1.3 Loading package flc v1.1.0 Loading package MASTER v6.1.2 Loading package BEASTLabs v1.9.7 Loading package BEAST_CLASSIC v1.5.0 Loading package FastRelaxedClockLogNormal v1.1.1 Loading package CodonSubstModels v1.1.3 Loading package STACEY v1.2.5 Loading package BEAST v2.6.6 Loading package besp v0.2.0 Loading package SCOTTI v2.0.1 Loading package BDMM v1.0 Loading package BASTA v3.0.1 Loading package OBAMA v0.2.0 Loading package MultiTypeTree v7.0.2 Loading package bModelTest v1.2.1 Loading package SSM v1.1.0 Loading package MM v1.1.1 Loading package BEAST v2.6.6 Ignoring ambiguities in tree likelihood. Ignoring character uncertainty in tree likelihood. With 10264 unique site patterns. Using rescaling scheme : dynamic Operator Tuning #accept #reject Pr(m) Pr(acc|m) ScaleOperator(YuleBirthRateScaler.t:31) 0.37119 1254479 3746863 0.02664 0.25083 ScaleOperator(YuleModelTreeScaler.t:31) 0.93992 504649 4496916 0.02664 0.10090 ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91085 450515 4553552 0.02664 0.09003 Try setting scaleFactor to about 0.954 Uniform(YuleModelUniformOperator.t:31) - 2896030 47110695 0.26643 0.05791 SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.35973 15915897 9091084 0.13321 0.63646 Try increasing size to about 0.719 Exchange(YuleModelNarrow.t:31) - 60218 24943290 0.13321 0.00241 Exchange(YuleModelWide.t:31) - 305 5004295 0.02664 0.00006 WilsonBalding(YuleModelWilsonBalding.t:31) - 228 5004754 0.02664 0.00005 DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00906 32196 134796 0.00089 0.19280 ScaleOperator(RateACScaler.s:31) 0.85031 19693 146527 0.00089 0.11848 ScaleOperator(RateAGScaler.s:31) 0.86589 19326 148227 0.00089 0.11534 ScaleOperator(RateATScaler.s:31) 0.75995 20769 145463 0.00089 0.12494 ScaleOperator(RateCGScaler.s:31) 0.78355 21758 144638 0.00089 0.13076 ScaleOperator(RateGTScaler.s:31) 0.80661 16442 149570 0.00089 0.09904 Try setting scaleFactor to about 0.898 ScaleOperator(ucldMeanScaler.c:31) 0.92905 166548 1499021 0.00888 0.09999 Try setting scaleFactor to about 0.964 ScaleOperator(ucldStdevScaler.c:31) 0.95001 871820 4133864 0.02664 0.17417 IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 6041947 10621929 0.08881 0.36258 SwapOperator(CategoriesSwapOperator.c:31) - 698948 15968446 0.08881 0.04194 UniformOperator(CategoriesUniform.c:31) - 1174749 15490620 0.08881 0.07049 UpDownOperator(relaxedUpDownOperator.c:31) 0.89712 928732 4070201 0.02664 0.18579 Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized. #accept: The total number of times a proposal by this operator has been accepted. #reject: The total number of times a proposal by this operator has been rejected. Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight). Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator). srun: Job step aborted: Waiting up to 32 seconds for job step to finish. slurmstepd: error: *** STEP 11757291.0 ON exp-5-58 CANCELLED AT 2022-04-30T03:57:58 DUE TO TIME LIMIT ***