File: infile.xml seed: 1651279413245 threads: 1 Loading package SNAPP v1.5.2 Loading package BDSKY v1.4.7 Loading package NS v1.1.0 Loading package substBMA v1.2.3 Loading package CA v2.0.0 Loading package PIQMEE v1.0.2 Loading package TreeStat2 v0.0.2 Loading package starbeast3 v1.0.3 Loading package Mascot v2.1.2 Loading package CoupledMCMC v1.0.2 Loading package SA v2.0.2 Loading package MODEL_SELECTION v1.5.3 Loading package BADTRIP v1.0.0 Loading package Babel v0.3.2 Loading package MGSM v0.3.0 Loading package CoalRe v0.0.7 Loading package snapper v1.0.2 Loading package phylodynamics v1.3.0 Loading package SpeciesNetwork v0.13.0 Loading package feast v7.10.0 Loading package starbeast2 v0.15.13 Loading package EpiInf v7.5.2 Loading package DENIM v1.0.1 Loading package ORC v1.0.3 Loading package PoMo v1.0.1 Loading package TMA v1.0.0 Loading package outercore v0.0.4 Loading package Beasy v0.0.2 Loading package BEASTvntr v0.1.3 Loading package flc v1.1.0 Loading package MASTER v6.1.2 Loading package BEASTLabs v1.9.7 Loading package BEAST_CLASSIC v1.5.0 Loading package FastRelaxedClockLogNormal v1.1.1 Loading package CodonSubstModels v1.1.3 Loading package STACEY v1.2.5 Loading package BEAST v2.6.6 Loading package besp v0.2.0 Loading package SCOTTI v2.0.1 Loading package BDMM v1.0 Loading package BASTA v3.0.1 Loading package OBAMA v0.2.0 Loading package MultiTypeTree v7.0.2 Loading package bModelTest v1.2.1 Loading package SSM v1.1.0 Loading package MM v1.1.1 Loading package BEAST v2.6.6 Ignoring ambiguities in tree likelihood. Ignoring character uncertainty in tree likelihood. With 10264 unique site patterns. Using rescaling scheme : dynamic Operator Tuning #accept #reject Pr(m) Pr(acc|m) ScaleOperator(YuleBirthRateScaler.t:31) 0.37412 533182 1562675 0.02664 0.25440 ScaleOperator(YuleModelTreeScaler.t:31) 0.93339 190116 1907960 0.02664 0.09061 Try setting scaleFactor to about 0.966 ScaleOperator(YuleModelTreeRootScaler.t:31) 0.90303 216012 1880124 0.02664 0.10305 Uniform(YuleModelUniformOperator.t:31) - 1177726 19793762 0.26643 0.05616 SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.24688 6316033 4162395 0.13321 0.60277 Try increasing size to about 0.494 Exchange(YuleModelNarrow.t:31) - 19334 10461501 0.13321 0.00184 Exchange(YuleModelWide.t:31) - 104 2098454 0.02664 0.00005 WilsonBalding(YuleModelWilsonBalding.t:31) - 82 2097489 0.02664 0.00004 DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00934 12850 57240 0.00089 0.18334 ScaleOperator(RateACScaler.s:31) 0.83805 7471 62275 0.00089 0.10712 ScaleOperator(RateAGScaler.s:31) 0.85421 7373 63092 0.00089 0.10463 ScaleOperator(RateATScaler.s:31) 0.74346 7851 61726 0.00089 0.11284 ScaleOperator(RateCGScaler.s:31) 0.76903 8291 61422 0.00089 0.11893 ScaleOperator(RateGTScaler.s:31) 0.78851 6194 63412 0.00089 0.08899 Try setting scaleFactor to about 0.888 ScaleOperator(ucldMeanScaler.c:31) 0.92143 61701 635800 0.00888 0.08846 Try setting scaleFactor to about 0.96 ScaleOperator(ucldStdevScaler.c:31) 0.94840 303675 1793708 0.02664 0.14479 IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 2384839 4603839 0.08881 0.34124 SwapOperator(CategoriesSwapOperator.c:31) - 279071 6707951 0.08881 0.03994 UniformOperator(CategoriesUniform.c:31) - 454894 6533795 0.08881 0.06509 UpDownOperator(relaxedUpDownOperator.c:31) 0.89269 400507 1694074 0.02664 0.19121 Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized. #accept: The total number of times a proposal by this operator has been accepted. #reject: The total number of times a proposal by this operator has been rejected. Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight). Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator). srun: Job step aborted: Waiting up to 32 seconds for job step to finish. slurmstepd: error: *** STEP 11744037.0 ON exp-6-59 CANCELLED AT 2022-04-29T18:13:32 DUE TO TIME LIMIT ***