stderr.txt (2727 bytes)
File: infile.xml seed: 1584990647000 threads: 4
Loading package MASTER v6.1.1
Loading package substBMA v1.2.3
Loading package SNAPP v1.5.0
Loading package BDSKY v1.4.5
Loading package BEASTvntr v0.1.3
Loading package BADTRIP v1.0.0
Loading package BEASTLabs v1.9.0
Loading package phylodynamics v1.3.0
Loading package DENIM v1.0.0
Loading package CA v2.0.0
Loading package MM v1.1.1
Loading package SCOTTI v2.0.1
Loading package TMA v1.0.0
Loading package SSM v1.1.0
Loading package CodonSubstModels v1.1.3
Loading package GEO_SPHERE v1.3.0
Loading package CoupledMCMC v0.1.8
Loading package BEAST_CLASSIC v1.5.0
Loading package BASTA v3.0.1
Loading package BEAST v2.6.1
Loading package SA v2.0.2
Loading package BREAK_AWAY v1.0.0
Loading package bModelTest v1.2.1
Loading package PoMo v1.0.1
Loading package NS v1.1.0
Loading package MSBD v1.1.2
Loading package bacter v2.2.3
Loading package Babel v0.2.1
Loading package MGSM v0.3.0
Loading package MultiTypeTree v7.0.1
Loading package SpeciesNetwork v0.13.0
Loading package TreeStat2 v0.0.2
Loading package MODEL_SELECTION v1.5.2
Loading package STACEY v1.2.5
Loading package PhyDyn v1.3.5
Loading package Mascot v1.2.2
Loading package BDMM v0.3.5
Loading package flc v1.1.0
Loading package EpiInf v7.2.0
Loading package starbeast2 v0.15.5
Loading package Beasy v0.0.2
Loading package BEAST v2.6.1
[Fatal Error] infile.xml:1:1: Content is not allowed in prolog.
java.lang.IllegalArgumentException: org.xml.sax.SAXParseException; systemId: file:/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-BEAST2_XSEDE-F8CA4771902243D08C267214E40EA481/infile.xml; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog.
at beast.app.BeastMCMC.parseArgs(Unknown Source)
at beast.app.beastapp.BeastMain.main(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at beast.app.beastapp.BeastLauncher.run(Unknown Source)
at beast.app.beastapp.BeastLauncher.main(Unknown Source)
Caused by: org.xml.sax.SAXParseException; systemId: file:/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-BEAST2_XSEDE-F8CA4771902243D08C267214E40EA481/infile.xml; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog.
at com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:257)
at com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:339)
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:205)
at beast.util.XMLParser.parseFile(Unknown Source)
... 8 more