stderr.txt (4626 bytes)
File: infile.xml seed: 1651398828749 threads: 1
Loading package SNAPP v1.5.2
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37794 960726 2763026 0.02664 0.25800
ScaleOperator(YuleModelTreeScaler.t:31) 0.93945 378503 3342399 0.02664 0.10172
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91988 326958 3392985 0.02664 0.08789 Try setting scaleFactor to about 0.959
Uniform(YuleModelUniformOperator.t:31) - 2172962 35038212 0.26643 0.05840
SubtreeSlide(YuleModelSubtreeSlide.t:31) 2.50008 3388900 15212096 0.13321 0.18219
Exchange(YuleModelNarrow.t:31) - 50985 18551358 0.13321 0.00274
Exchange(YuleModelWide.t:31) - 260 3723597 0.02664 0.00007
WilsonBalding(YuleModelWilsonBalding.t:31) - 123 3718009 0.02664 0.00003
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00802 27702 96502 0.00089 0.22304
ScaleOperator(RateACScaler.s:31) 0.86511 16575 107014 0.00089 0.13411
ScaleOperator(RateAGScaler.s:31) 0.86967 14691 108967 0.00089 0.11880
ScaleOperator(RateATScaler.s:31) 0.80307 20022 104370 0.00089 0.16096
ScaleOperator(RateCGScaler.s:31) 0.82362 20944 102685 0.00089 0.16941
ScaleOperator(RateGTScaler.s:31) 0.84833 16882 107387 0.00089 0.13585
ScaleOperator(ucldMeanScaler.c:31) 0.92546 117374 1122668 0.00888 0.09465 Try setting scaleFactor to about 0.962
ScaleOperator(ucldStdevScaler.c:31) 0.92753 445276 3275037 0.02664 0.11969
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 4635606 7755956 0.08881 0.37409
SwapOperator(CategoriesSwapOperator.c:31) - 525752 11872688 0.08881 0.04240
UniformOperator(CategoriesUniform.c:31) - 894824 11504971 0.08881 0.07216
UpDownOperator(relaxedUpDownOperator.c:31) 0.88641 669875 3050133 0.02664 0.18007
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11773494.0 ON exp-4-58 CANCELLED AT 2022-05-01T03:23:44 DUE TO TIME LIMIT ***