stderr_copy_2.txt

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stderr_copy_2.txt (4626 bytes)

File: infile.xml seed: 1651398828749 threads: 1
Loading package SNAPP v1.5.2
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37794     960726    2763026    0.02664    0.25800 
ScaleOperator(YuleModelTreeScaler.t:31)             0.93945     378503    3342399    0.02664    0.10172 
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.91988     326958    3392985    0.02664    0.08789 Try setting scaleFactor to about 0.959
Uniform(YuleModelUniformOperator.t:31)                    -    2172962   35038212    0.26643    0.05840 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            2.50008    3388900   15212096    0.13321    0.18219 
Exchange(YuleModelNarrow.t:31)                            -      50985   18551358    0.13321    0.00274 
Exchange(YuleModelWide.t:31)                              -        260    3723597    0.02664    0.00007 
WilsonBalding(YuleModelWilsonBalding.t:31)                -        123    3718009    0.02664    0.00003 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00802      27702      96502    0.00089    0.22304 
ScaleOperator(RateACScaler.s:31)                    0.86511      16575     107014    0.00089    0.13411 
ScaleOperator(RateAGScaler.s:31)                    0.86967      14691     108967    0.00089    0.11880 
ScaleOperator(RateATScaler.s:31)                    0.80307      20022     104370    0.00089    0.16096 
ScaleOperator(RateCGScaler.s:31)                    0.82362      20944     102685    0.00089    0.16941 
ScaleOperator(RateGTScaler.s:31)                    0.84833      16882     107387    0.00089    0.13585 
ScaleOperator(ucldMeanScaler.c:31)                  0.92546     117374    1122668    0.00888    0.09465 Try setting scaleFactor to about 0.962
ScaleOperator(ucldStdevScaler.c:31)                 0.92753     445276    3275037    0.02664    0.11969 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    4635606    7755956    0.08881    0.37409 
SwapOperator(CategoriesSwapOperator.c:31)                 -     525752   11872688    0.08881    0.04240 
UniformOperator(CategoriesUniform.c:31)                   -     894824   11504971    0.08881    0.07216 
UpDownOperator(relaxedUpDownOperator.c:31)          0.88641     669875    3050133    0.02664    0.18007 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11773494.0 ON exp-4-58 CANCELLED AT 2022-05-01T03:23:44 DUE TO TIME LIMIT ***