stderr.run14.txt (4664 bytes)
File: infile.xml seed: 1651388757708 threads: 1
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.38243 393076 1102623 0.02664 0.26280
ScaleOperator(YuleModelTreeScaler.t:31) 0.93257 136190 1358414 0.02664 0.09112 Try setting scaleFactor to about 0.966
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91182 119866 1373021 0.02664 0.08029 Try setting scaleFactor to about 0.955
Uniform(YuleModelUniformOperator.t:31) - 868539 14080819 0.26643 0.05810
SubtreeSlide(YuleModelSubtreeSlide.t:31) 2.61370 1367990 6106458 0.13321 0.18302
Exchange(YuleModelNarrow.t:31) - 17387 7454203 0.13321 0.00233
Exchange(YuleModelWide.t:31) - 87 1496108 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 41 1495086 0.02664 0.00003
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00810 10966 39135 0.00089 0.21888
ScaleOperator(RateACScaler.s:31) 0.85497 6039 43730 0.00089 0.12134
ScaleOperator(RateAGScaler.s:31) 0.85803 5332 44297 0.00089 0.10744
ScaleOperator(RateATScaler.s:31) 0.79314 7526 42260 0.00089 0.15117
ScaleOperator(RateCGScaler.s:31) 0.81579 8029 42133 0.00089 0.16006
ScaleOperator(RateGTScaler.s:31) 0.83727 6254 43565 0.00089 0.12553
ScaleOperator(ucldMeanScaler.c:31) 0.91669 41505 456747 0.00888 0.08330 Try setting scaleFactor to about 0.957
ScaleOperator(ucldStdevScaler.c:31) 0.92076 159929 1336298 0.02664 0.10689
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 1871044 3107058 0.08881 0.37585
SwapOperator(CategoriesSwapOperator.c:31) - 211691 4770810 0.08881 0.04249
UniformOperator(CategoriesUniform.c:31) - 357643 4623504 0.08881 0.07180
UpDownOperator(relaxedUpDownOperator.c:31) 0.88090 276882 1217715 0.02664 0.18526
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11771072.0 ON exp-8-57 CANCELLED AT 2022-05-01T00:36:11 DUE TO TIME LIMIT ***