stderr.run14.txt

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stderr.run14.txt (4664 bytes)

File: infile.xml seed: 1651388757708 threads: 1
Loading package SNAPP v1.5.2
Loading package BDSKY v1.4.7
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.38243     393076    1102623    0.02664    0.26280 
ScaleOperator(YuleModelTreeScaler.t:31)             0.93257     136190    1358414    0.02664    0.09112 Try setting scaleFactor to about 0.966
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.91182     119866    1373021    0.02664    0.08029 Try setting scaleFactor to about 0.955
Uniform(YuleModelUniformOperator.t:31)                    -     868539   14080819    0.26643    0.05810 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            2.61370    1367990    6106458    0.13321    0.18302 
Exchange(YuleModelNarrow.t:31)                            -      17387    7454203    0.13321    0.00233 
Exchange(YuleModelWide.t:31)                              -         87    1496108    0.02664    0.00006 
WilsonBalding(YuleModelWilsonBalding.t:31)                -         41    1495086    0.02664    0.00003 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00810      10966      39135    0.00089    0.21888 
ScaleOperator(RateACScaler.s:31)                    0.85497       6039      43730    0.00089    0.12134 
ScaleOperator(RateAGScaler.s:31)                    0.85803       5332      44297    0.00089    0.10744 
ScaleOperator(RateATScaler.s:31)                    0.79314       7526      42260    0.00089    0.15117 
ScaleOperator(RateCGScaler.s:31)                    0.81579       8029      42133    0.00089    0.16006 
ScaleOperator(RateGTScaler.s:31)                    0.83727       6254      43565    0.00089    0.12553 
ScaleOperator(ucldMeanScaler.c:31)                  0.91669      41505     456747    0.00888    0.08330 Try setting scaleFactor to about 0.957
ScaleOperator(ucldStdevScaler.c:31)                 0.92076     159929    1336298    0.02664    0.10689 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    1871044    3107058    0.08881    0.37585 
SwapOperator(CategoriesSwapOperator.c:31)                 -     211691    4770810    0.08881    0.04249 
UniformOperator(CategoriesUniform.c:31)                   -     357643    4623504    0.08881    0.07180 
UpDownOperator(relaxedUpDownOperator.c:31)          0.88090     276882    1217715    0.02664    0.18526 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11771072.0 ON exp-8-57 CANCELLED AT 2022-05-01T00:36:11 DUE TO TIME LIMIT ***