stderr.run2.txt (4816 bytes)
File: infile.xml seed: 1651221078739 threads: 1
Loading package SNAPP v1.5.2
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37891 177470 506942 0.02664 0.25930
ScaleOperator(YuleModelTreeScaler.t:31) 0.92306 53396 631261 0.02664 0.07799 Try setting scaleFactor to about 0.961
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.89284 95794 588677 0.02664 0.13995
Uniform(YuleModelUniformOperator.t:31) - 344041 6505207 0.26643 0.05023
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.13757 1000839 2420072 0.13321 0.29257
Exchange(YuleModelNarrow.t:31) - 113 3422519 0.13321 0.00003
Exchange(YuleModelWide.t:31) - 5 684874 0.02664 0.00001
WilsonBalding(YuleModelWilsonBalding.t:31) - 23 684352 0.02664 0.00003
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00983 3937 18888 0.00089 0.17249
ScaleOperator(RateACScaler.s:31) 0.81883 2095 20614 0.00089 0.09225 Try setting scaleFactor to about 0.905
ScaleOperator(RateAGScaler.s:31) 0.83607 2119 20837 0.00089 0.09231 Try setting scaleFactor to about 0.914
ScaleOperator(RateATScaler.s:31) 0.71806 2233 20451 0.00089 0.09844 Try setting scaleFactor to about 0.847
ScaleOperator(RateCGScaler.s:31) 0.74693 2351 20442 0.00089 0.10315
ScaleOperator(RateGTScaler.s:31) 0.76120 1705 20907 0.00089 0.07540 Try setting scaleFactor to about 0.872
ScaleOperator(ucldMeanScaler.c:31) 0.90931 17051 211090 0.00888 0.07474 Try setting scaleFactor to about 0.954
ScaleOperator(ucldStdevScaler.c:31) 0.94547 45052 639066 0.02664 0.06585 Try setting scaleFactor to about 0.972
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 621161 1660713 0.08881 0.27222
SwapOperator(CategoriesSwapOperator.c:31) - 80447 2203219 0.08881 0.03523
UniformOperator(CategoriesUniform.c:31) - 109577 2171119 0.08881 0.04805
UpDownOperator(relaxedUpDownOperator.c:31) 0.88698 143014 541327 0.02664 0.20898
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11737193.0 ON exp-5-60 CANCELLED AT 2022-04-29T02:01:32 DUE TO TIME LIMIT ***