stderr.run3_copy_1.txt (4698 bytes)
File: infile.xml seed: 1651223770353 threads: 1
Loading package SNAPP v1.5.2
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37574 356442 1036608 0.02664 0.25587
ScaleOperator(YuleModelTreeScaler.t:31) 0.92993 119189 1275415 0.02664 0.08546 Try setting scaleFactor to about 0.964
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.89948 155712 1238004 0.02664 0.11172
Uniform(YuleModelUniformOperator.t:31) - 763494 13178396 0.26643 0.05476
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.20060 3718542 3249420 0.13321 0.53366 Try increasing size to about 0.401
Exchange(YuleModelNarrow.t:31) - 8701 6960938 0.13321 0.00125
Exchange(YuleModelWide.t:31) - 46 1395288 0.02664 0.00003
WilsonBalding(YuleModelWilsonBalding.t:31) - 52 1394500 0.02664 0.00004
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00951 8405 38189 0.00089 0.18039
ScaleOperator(RateACScaler.s:31) 0.83133 4736 41527 0.00089 0.10237
ScaleOperator(RateAGScaler.s:31) 0.84791 4689 41998 0.00089 0.10043
ScaleOperator(RateATScaler.s:31) 0.73451 4968 40992 0.00089 0.10809
ScaleOperator(RateCGScaler.s:31) 0.76145 5218 40996 0.00089 0.11291
ScaleOperator(RateGTScaler.s:31) 0.77908 3894 42422 0.00089 0.08407 Try setting scaleFactor to about 0.883
ScaleOperator(ucldMeanScaler.c:31) 0.91733 38693 425242 0.00888 0.08340 Try setting scaleFactor to about 0.958
ScaleOperator(ucldStdevScaler.c:31) 0.94750 171273 1222908 0.02664 0.12285
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 1507173 3138258 0.08881 0.32444
SwapOperator(CategoriesSwapOperator.c:31) - 181085 4463965 0.08881 0.03898
UniformOperator(CategoriesUniform.c:31) - 281941 4364085 0.08881 0.06068
UpDownOperator(relaxedUpDownOperator.c:31) 0.89104 266391 1125205 0.02664 0.19143
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11737254.0 ON exp-5-60 CANCELLED AT 2022-04-29T02:46:11 DUE TO TIME LIMIT ***