stderr.run11.txt

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stderr.run11.txt (4622 bytes)

File: infile.xml seed: 1651364047581 threads: 1
Loading package SNAPP v1.5.2
Loading package BDSKY v1.4.7
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Loading package substBMA v1.2.3
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37017    1787856    5378008    0.02664    0.24950 
ScaleOperator(YuleModelTreeScaler.t:31)             0.94226     757021    6408641    0.02664    0.10565 
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.91388     633073    6535016    0.02664    0.08832 Try setting scaleFactor to about 0.956
Uniform(YuleModelUniformOperator.t:31)                    -    4170669   67483819    0.26643    0.05821 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            0.41345   22635763   13192088    0.13321    0.63179 Try increasing size to about 0.827
Exchange(YuleModelNarrow.t:31)                            -      93830   35735810    0.13321    0.00262 
Exchange(YuleModelWide.t:31)                              -        484    7170461    0.02664    0.00007 
WilsonBalding(YuleModelWilsonBalding.t:31)                -        313    7167894    0.02664    0.00004 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00895      46802     192411    0.00089    0.19565 
ScaleOperator(RateACScaler.s:31)                    0.85484      29402     209089    0.00089    0.12328 
ScaleOperator(RateAGScaler.s:31)                    0.87004      28954     210685    0.00089    0.12082 
ScaleOperator(RateATScaler.s:31)                    0.76605      31000     207199    0.00089    0.13014 
ScaleOperator(RateCGScaler.s:31)                    0.78903      32101     206182    0.00089    0.13472 
ScaleOperator(RateGTScaler.s:31)                    0.81326      24797     213664    0.00089    0.10399 
ScaleOperator(ucldMeanScaler.c:31)                  0.93184     249115    2138550    0.00888    0.10433 
ScaleOperator(ucldStdevScaler.c:31)                 0.95069    1293510    5876455    0.02664    0.18041 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    8742008   15136287    0.08881    0.36611 
SwapOperator(CategoriesSwapOperator.c:31)                 -    1006408   22876724    0.08881    0.04214 
UniformOperator(CategoriesUniform.c:31)                   -    1700569   22182150    0.08881    0.07120 
UpDownOperator(relaxedUpDownOperator.c:31)          0.89844    1349760    5810432    0.02664    0.18851 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11766340.0 ON exp-2-60 CANCELLED AT 2022-04-30T17:44:22 DUE TO TIME LIMIT ***