stderr.run4_copy_1.txt (4697 bytes)
File: infile.xml seed: 1651279413245 threads: 1
Loading package SNAPP v1.5.2
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37412 533182 1562675 0.02664 0.25440
ScaleOperator(YuleModelTreeScaler.t:31) 0.93339 190116 1907960 0.02664 0.09061 Try setting scaleFactor to about 0.966
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.90303 216012 1880124 0.02664 0.10305
Uniform(YuleModelUniformOperator.t:31) - 1177726 19793762 0.26643 0.05616
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.24688 6316033 4162395 0.13321 0.60277 Try increasing size to about 0.494
Exchange(YuleModelNarrow.t:31) - 19334 10461501 0.13321 0.00184
Exchange(YuleModelWide.t:31) - 104 2098454 0.02664 0.00005
WilsonBalding(YuleModelWilsonBalding.t:31) - 82 2097489 0.02664 0.00004
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00934 12850 57240 0.00089 0.18334
ScaleOperator(RateACScaler.s:31) 0.83805 7471 62275 0.00089 0.10712
ScaleOperator(RateAGScaler.s:31) 0.85421 7373 63092 0.00089 0.10463
ScaleOperator(RateATScaler.s:31) 0.74346 7851 61726 0.00089 0.11284
ScaleOperator(RateCGScaler.s:31) 0.76903 8291 61422 0.00089 0.11893
ScaleOperator(RateGTScaler.s:31) 0.78851 6194 63412 0.00089 0.08899 Try setting scaleFactor to about 0.888
ScaleOperator(ucldMeanScaler.c:31) 0.92143 61701 635800 0.00888 0.08846 Try setting scaleFactor to about 0.96
ScaleOperator(ucldStdevScaler.c:31) 0.94840 303675 1793708 0.02664 0.14479
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 2384839 4603839 0.08881 0.34124
SwapOperator(CategoriesSwapOperator.c:31) - 279071 6707951 0.08881 0.03994
UniformOperator(CategoriesUniform.c:31) - 454894 6533795 0.08881 0.06509
UpDownOperator(relaxedUpDownOperator.c:31) 0.89269 400507 1694074 0.02664 0.19121
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11744037.0 ON exp-6-59 CANCELLED AT 2022-04-29T18:13:32 DUE TO TIME LIMIT ***