stderr.run16_copy_2.txt

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stderr.run16_copy_2.txt (4664 bytes)

File: infile.xml seed: 1651395058578 threads: 1
Loading package SNAPP v1.5.2
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37895     772326    2209606    0.02664    0.25900 
ScaleOperator(YuleModelTreeScaler.t:31)             0.93789     295663    2683817    0.02664    0.09923 Try setting scaleFactor to about 0.968
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.91801     256965    2721452    0.02664    0.08628 Try setting scaleFactor to about 0.958
Uniform(YuleModelUniformOperator.t:31)                    -    1738118   28066576    0.26643    0.05832 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            2.53076    2741290   12157611    0.13321    0.18399 
Exchange(YuleModelNarrow.t:31)                            -      38875   14862744    0.13321    0.00261 
Exchange(YuleModelWide.t:31)                              -        190    2982104    0.02664    0.00006 
WilsonBalding(YuleModelWilsonBalding.t:31)                -         96    2979291    0.02664    0.00003 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00804      22094      77277    0.00089    0.22234 
ScaleOperator(RateACScaler.s:31)                    0.86289      12955      86171    0.00089    0.13069 
ScaleOperator(RateAGScaler.s:31)                    0.86713      11411      87784    0.00089    0.11504 
ScaleOperator(RateATScaler.s:31)                    0.80076      15824      83732    0.00089    0.15895 
ScaleOperator(RateCGScaler.s:31)                    0.82178      16669      82653    0.00089    0.16783 
ScaleOperator(RateGTScaler.s:31)                    0.84581      13282      86364    0.00089    0.13329 
ScaleOperator(ucldMeanScaler.c:31)                  0.92347      91370     902113    0.00888    0.09197 Try setting scaleFactor to about 0.961
ScaleOperator(ucldStdevScaler.c:31)                 0.92596     349268    2632658    0.02664    0.11713 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    3706675    6219227    0.08881    0.37343 
SwapOperator(CategoriesSwapOperator.c:31)                 -     419658    9512784    0.08881    0.04225 
UniformOperator(CategoriesUniform.c:31)                   -     714393    9219627    0.08881    0.07191 
UpDownOperator(relaxedUpDownOperator.c:31)          0.88503     541278    2438009    0.02664    0.18168 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11772403.0 ON exp-4-60 CANCELLED AT 2022-05-01T02:21:13 DUE TO TIME LIMIT ***