stderr.run5_copy_3.txt (4736 bytes)
File: infile.xml seed: 1651299117909 threads: 1
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37306 711768 2098404 0.02664 0.25328
ScaleOperator(YuleModelTreeScaler.t:31) 0.93574 263495 2547354 0.02664 0.09374 Try setting scaleFactor to about 0.967
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.90563 275199 2535852 0.02664 0.09790 Try setting scaleFactor to about 0.952
Uniform(YuleModelUniformOperator.t:31) - 1602495 26507598 0.26643 0.05701
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.28320 8818748 5230226 0.13321 0.62771 Try increasing size to about 0.566
Exchange(YuleModelNarrow.t:31) - 30195 14021630 0.13321 0.00215
Exchange(YuleModelWide.t:31) - 156 2813165 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 122 2812785 0.02664 0.00004
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00924 17488 76361 0.00089 0.18634
ScaleOperator(RateACScaler.s:31) 0.84233 10433 82910 0.00089 0.11177
ScaleOperator(RateAGScaler.s:31) 0.85845 10163 84298 0.00089 0.10759
ScaleOperator(RateATScaler.s:31) 0.74928 10956 82424 0.00089 0.11733
ScaleOperator(RateCGScaler.s:31) 0.77418 11520 81987 0.00089 0.12320
ScaleOperator(RateGTScaler.s:31) 0.79495 8541 84568 0.00089 0.09173 Try setting scaleFactor to about 0.892
ScaleOperator(ucldMeanScaler.c:31) 0.92416 86217 849093 0.00888 0.09218 Try setting scaleFactor to about 0.961
ScaleOperator(ucldStdevScaler.c:31) 0.94890 446177 2366475 0.02664 0.15863
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 3290018 6076903 0.08881 0.35124
SwapOperator(CategoriesSwapOperator.c:31) - 382608 8985319 0.08881 0.04084
UniformOperator(CategoriesUniform.c:31) - 634853 8733449 0.08881 0.06777
UpDownOperator(relaxedUpDownOperator.c:31) 0.89439 524282 2283765 0.02664 0.18671
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11753750.0 ON exp-5-58 CANCELLED AT 2022-04-29T23:42:11 DUE TO TIME LIMIT ***