stderr.run5_copy_3.txt

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stderr.run5_copy_3.txt (4736 bytes)

File: infile.xml seed: 1651299117909 threads: 1
Loading package SNAPP v1.5.2
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37306     711768    2098404    0.02664    0.25328 
ScaleOperator(YuleModelTreeScaler.t:31)             0.93574     263495    2547354    0.02664    0.09374 Try setting scaleFactor to about 0.967
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.90563     275199    2535852    0.02664    0.09790 Try setting scaleFactor to about 0.952
Uniform(YuleModelUniformOperator.t:31)                    -    1602495   26507598    0.26643    0.05701 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            0.28320    8818748    5230226    0.13321    0.62771 Try increasing size to about 0.566
Exchange(YuleModelNarrow.t:31)                            -      30195   14021630    0.13321    0.00215 
Exchange(YuleModelWide.t:31)                              -        156    2813165    0.02664    0.00006 
WilsonBalding(YuleModelWilsonBalding.t:31)                -        122    2812785    0.02664    0.00004 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00924      17488      76361    0.00089    0.18634 
ScaleOperator(RateACScaler.s:31)                    0.84233      10433      82910    0.00089    0.11177 
ScaleOperator(RateAGScaler.s:31)                    0.85845      10163      84298    0.00089    0.10759 
ScaleOperator(RateATScaler.s:31)                    0.74928      10956      82424    0.00089    0.11733 
ScaleOperator(RateCGScaler.s:31)                    0.77418      11520      81987    0.00089    0.12320 
ScaleOperator(RateGTScaler.s:31)                    0.79495       8541      84568    0.00089    0.09173 Try setting scaleFactor to about 0.892
ScaleOperator(ucldMeanScaler.c:31)                  0.92416      86217     849093    0.00888    0.09218 Try setting scaleFactor to about 0.961
ScaleOperator(ucldStdevScaler.c:31)                 0.94890     446177    2366475    0.02664    0.15863 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    3290018    6076903    0.08881    0.35124 
SwapOperator(CategoriesSwapOperator.c:31)                 -     382608    8985319    0.08881    0.04084 
UniformOperator(CategoriesUniform.c:31)                   -     634853    8733449    0.08881    0.06777 
UpDownOperator(relaxedUpDownOperator.c:31)          0.89439     524282    2283765    0.02664    0.18671 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11753750.0 ON exp-5-58 CANCELLED AT 2022-04-29T23:42:11 DUE TO TIME LIMIT ***