stderr.run13_copy_1.txt (4667 bytes)
File: infile.xml seed: 1651375137968 threads: 1
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.38652 198678 542834 0.02664 0.26794
ScaleOperator(YuleModelTreeScaler.t:31) 0.92632 61587 679443 0.02664 0.08311 Try setting scaleFactor to about 0.962
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.90446 56250 683762 0.02664 0.07601 Try setting scaleFactor to about 0.951
Uniform(YuleModelUniformOperator.t:31) - 427451 6977093 0.26643 0.05773
SubtreeSlide(YuleModelSubtreeSlide.t:31) 2.71232 697026 3005468 0.13321 0.18826
Exchange(YuleModelNarrow.t:31) - 8780 3694232 0.13321 0.00237
Exchange(YuleModelWide.t:31) - 47 741684 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 15 740189 0.02664 0.00002
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00817 5405 19441 0.00089 0.21754
ScaleOperator(RateACScaler.s:31) 0.84555 2830 21917 0.00089 0.11436
ScaleOperator(RateAGScaler.s:31) 0.84754 2426 22081 0.00089 0.09899 Try setting scaleFactor to about 0.921
ScaleOperator(RateATScaler.s:31) 0.78467 3522 21302 0.00089 0.14188
ScaleOperator(RateCGScaler.s:31) 0.80868 3766 21129 0.00089 0.15128
ScaleOperator(RateGTScaler.s:31) 0.82738 2890 21714 0.00089 0.11746
ScaleOperator(ucldMeanScaler.c:31) 0.90870 18448 228266 0.00888 0.07477 Try setting scaleFactor to about 0.953
ScaleOperator(ucldStdevScaler.c:31) 0.91432 72622 668237 0.02664 0.09802 Try setting scaleFactor to about 0.956
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 928912 1538637 0.08881 0.37645
SwapOperator(CategoriesSwapOperator.c:31) - 105083 2363668 0.08881 0.04257
UniformOperator(CategoriesUniform.c:31) - 176949 2290661 0.08881 0.07171
UpDownOperator(relaxedUpDownOperator.c:31) 0.87693 140574 599981 0.02664 0.18982
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
slurmstepd: error: *** STEP 11768376.0 ON exp-2-60 CANCELLED AT 2022-04-30T20:49:20 DUE TO TIME LIMIT ***