stderr.run9_copy_3.txt (4622 bytes)
File: infile.xml seed: 1651317934969 threads: 1
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37079 1431573 4285925 0.02664 0.25038
ScaleOperator(YuleModelTreeScaler.t:31) 0.94082 586522 5131679 0.02664 0.10257
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91202 508952 5210592 0.02664 0.08898 Try setting scaleFactor to about 0.955
Uniform(YuleModelUniformOperator.t:31) - 3313663 53851452 0.26643 0.05797
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.37859 18119861 10464224 0.13321 0.63391 Try increasing size to about 0.757
Exchange(YuleModelNarrow.t:31) - 71619 28510776 0.13321 0.00251
Exchange(YuleModelWide.t:31) - 356 5721656 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 259 5719104 0.02664 0.00005
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00902 37072 153706 0.00089 0.19432
ScaleOperator(RateACScaler.s:31) 0.85204 22929 167421 0.00089 0.12046
ScaleOperator(RateAGScaler.s:31) 0.86748 22498 169060 0.00089 0.11745
ScaleOperator(RateATScaler.s:31) 0.76229 24052 165871 0.00089 0.12664
ScaleOperator(RateCGScaler.s:31) 0.78564 25145 165150 0.00089 0.13214
ScaleOperator(RateGTScaler.s:31) 0.80917 19134 170862 0.00089 0.10071
ScaleOperator(ucldMeanScaler.c:31) 0.93012 193333 1711483 0.00888 0.10150
ScaleOperator(ucldStdevScaler.c:31) 0.95038 997739 4722500 0.02664 0.17442
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 6920262 12128884 0.08881 0.36328
SwapOperator(CategoriesSwapOperator.c:31) - 797670 18254725 0.08881 0.04187
UniformOperator(CategoriesUniform.c:31) - 1343544 17709819 0.08881 0.07051
UpDownOperator(relaxedUpDownOperator.c:31) 0.89770 1062569 4651359 0.02664 0.18596
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11757698.0 ON exp-5-58 CANCELLED AT 2022-04-30T04:55:39 DUE TO TIME LIMIT ***