stderr.run9_copy_3.txt

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stderr.run9_copy_3.txt (4622 bytes)

File: infile.xml seed: 1651317934969 threads: 1
Loading package SNAPP v1.5.2
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37079    1431573    4285925    0.02664    0.25038 
ScaleOperator(YuleModelTreeScaler.t:31)             0.94082     586522    5131679    0.02664    0.10257 
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.91202     508952    5210592    0.02664    0.08898 Try setting scaleFactor to about 0.955
Uniform(YuleModelUniformOperator.t:31)                    -    3313663   53851452    0.26643    0.05797 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            0.37859   18119861   10464224    0.13321    0.63391 Try increasing size to about 0.757
Exchange(YuleModelNarrow.t:31)                            -      71619   28510776    0.13321    0.00251 
Exchange(YuleModelWide.t:31)                              -        356    5721656    0.02664    0.00006 
WilsonBalding(YuleModelWilsonBalding.t:31)                -        259    5719104    0.02664    0.00005 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00902      37072     153706    0.00089    0.19432 
ScaleOperator(RateACScaler.s:31)                    0.85204      22929     167421    0.00089    0.12046 
ScaleOperator(RateAGScaler.s:31)                    0.86748      22498     169060    0.00089    0.11745 
ScaleOperator(RateATScaler.s:31)                    0.76229      24052     165871    0.00089    0.12664 
ScaleOperator(RateCGScaler.s:31)                    0.78564      25145     165150    0.00089    0.13214 
ScaleOperator(RateGTScaler.s:31)                    0.80917      19134     170862    0.00089    0.10071 
ScaleOperator(ucldMeanScaler.c:31)                  0.93012     193333    1711483    0.00888    0.10150 
ScaleOperator(ucldStdevScaler.c:31)                 0.95038     997739    4722500    0.02664    0.17442 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    6920262   12128884    0.08881    0.36328 
SwapOperator(CategoriesSwapOperator.c:31)                 -     797670   18254725    0.08881    0.04187 
UniformOperator(CategoriesUniform.c:31)                   -    1343544   17709819    0.08881    0.07051 
UpDownOperator(relaxedUpDownOperator.c:31)          0.89770    1062569    4651359    0.02664    0.18596 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11757698.0 ON exp-5-58 CANCELLED AT 2022-04-30T04:55:39 DUE TO TIME LIMIT ***