stderr.run2_copy_3.txt

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stderr.run2_copy_3.txt (4816 bytes)

File: infile.xml seed: 1651221078739 threads: 1
Loading package SNAPP v1.5.2
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37891     177470     506942    0.02664    0.25930 
ScaleOperator(YuleModelTreeScaler.t:31)             0.92306      53396     631261    0.02664    0.07799 Try setting scaleFactor to about 0.961
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.89284      95794     588677    0.02664    0.13995 
Uniform(YuleModelUniformOperator.t:31)                    -     344041    6505207    0.26643    0.05023 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            0.13757    1000839    2420072    0.13321    0.29257 
Exchange(YuleModelNarrow.t:31)                            -        113    3422519    0.13321    0.00003 
Exchange(YuleModelWide.t:31)                              -          5     684874    0.02664    0.00001 
WilsonBalding(YuleModelWilsonBalding.t:31)                -         23     684352    0.02664    0.00003 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00983       3937      18888    0.00089    0.17249 
ScaleOperator(RateACScaler.s:31)                    0.81883       2095      20614    0.00089    0.09225 Try setting scaleFactor to about 0.905
ScaleOperator(RateAGScaler.s:31)                    0.83607       2119      20837    0.00089    0.09231 Try setting scaleFactor to about 0.914
ScaleOperator(RateATScaler.s:31)                    0.71806       2233      20451    0.00089    0.09844 Try setting scaleFactor to about 0.847
ScaleOperator(RateCGScaler.s:31)                    0.74693       2351      20442    0.00089    0.10315 
ScaleOperator(RateGTScaler.s:31)                    0.76120       1705      20907    0.00089    0.07540 Try setting scaleFactor to about 0.872
ScaleOperator(ucldMeanScaler.c:31)                  0.90931      17051     211090    0.00888    0.07474 Try setting scaleFactor to about 0.954
ScaleOperator(ucldStdevScaler.c:31)                 0.94547      45052     639066    0.02664    0.06585 Try setting scaleFactor to about 0.972
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -     621161    1660713    0.08881    0.27222 
SwapOperator(CategoriesSwapOperator.c:31)                 -      80447    2203219    0.08881    0.03523 
UniformOperator(CategoriesUniform.c:31)                   -     109577    2171119    0.08881    0.04805 
UpDownOperator(relaxedUpDownOperator.c:31)          0.88698     143014     541327    0.02664    0.20898 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11737193.0 ON exp-5-60 CANCELLED AT 2022-04-29T02:01:32 DUE TO TIME LIMIT ***