stderr.run11_copy_3.txt (4622 bytes)
File: infile.xml seed: 1651364047581 threads: 1
Loading package SNAPP v1.5.2
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37017 1787856 5378008 0.02664 0.24950
ScaleOperator(YuleModelTreeScaler.t:31) 0.94226 757021 6408641 0.02664 0.10565
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91388 633073 6535016 0.02664 0.08832 Try setting scaleFactor to about 0.956
Uniform(YuleModelUniformOperator.t:31) - 4170669 67483819 0.26643 0.05821
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.41345 22635763 13192088 0.13321 0.63179 Try increasing size to about 0.827
Exchange(YuleModelNarrow.t:31) - 93830 35735810 0.13321 0.00262
Exchange(YuleModelWide.t:31) - 484 7170461 0.02664 0.00007
WilsonBalding(YuleModelWilsonBalding.t:31) - 313 7167894 0.02664 0.00004
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00895 46802 192411 0.00089 0.19565
ScaleOperator(RateACScaler.s:31) 0.85484 29402 209089 0.00089 0.12328
ScaleOperator(RateAGScaler.s:31) 0.87004 28954 210685 0.00089 0.12082
ScaleOperator(RateATScaler.s:31) 0.76605 31000 207199 0.00089 0.13014
ScaleOperator(RateCGScaler.s:31) 0.78903 32101 206182 0.00089 0.13472
ScaleOperator(RateGTScaler.s:31) 0.81326 24797 213664 0.00089 0.10399
ScaleOperator(ucldMeanScaler.c:31) 0.93184 249115 2138550 0.00888 0.10433
ScaleOperator(ucldStdevScaler.c:31) 0.95069 1293510 5876455 0.02664 0.18041
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 8742008 15136287 0.08881 0.36611
SwapOperator(CategoriesSwapOperator.c:31) - 1006408 22876724 0.08881 0.04214
UniformOperator(CategoriesUniform.c:31) - 1700569 22182150 0.08881 0.07120
UpDownOperator(relaxedUpDownOperator.c:31) 0.89844 1349760 5810432 0.02664 0.18851
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11766340.0 ON exp-2-60 CANCELLED AT 2022-04-30T17:44:22 DUE TO TIME LIMIT ***