stderr.run6_copy_3.txt (4663 bytes)
File: infile.xml seed: 1651303605943 threads: 1
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37228 892071 2644902 0.02664 0.25221
ScaleOperator(YuleModelTreeScaler.t:31) 0.93746 341603 3194015 0.02664 0.09662 Try setting scaleFactor to about 0.968
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.90772 332445 3204808 0.02664 0.09398 Try setting scaleFactor to about 0.953
Uniform(YuleModelUniformOperator.t:31) - 2031652 33334624 0.26643 0.05745
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.31210 11198430 6478498 0.13321 0.63351 Try increasing size to about 0.624
Exchange(YuleModelNarrow.t:31) - 40844 17638769 0.13321 0.00231
Exchange(YuleModelWide.t:31) - 201 3538461 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 164 3538424 0.02664 0.00005
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00916 22386 95758 0.00089 0.18948
ScaleOperator(RateACScaler.s:31) 0.84556 13456 103945 0.00089 0.11462
ScaleOperator(RateAGScaler.s:31) 0.86152 13155 105648 0.00089 0.11073
ScaleOperator(RateATScaler.s:31) 0.75363 14117 103197 0.00089 0.12034
ScaleOperator(RateCGScaler.s:31) 0.77792 14829 102428 0.00089 0.12647
ScaleOperator(RateGTScaler.s:31) 0.79972 11081 106169 0.00089 0.09451 Try setting scaleFactor to about 0.894
ScaleOperator(ucldMeanScaler.c:31) 0.92617 112274 1064415 0.00888 0.09542 Try setting scaleFactor to about 0.962
ScaleOperator(ucldStdevScaler.c:31) 0.94935 587049 2952649 0.02664 0.16585
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 4207151 7577439 0.08881 0.35700
SwapOperator(CategoriesSwapOperator.c:31) - 488415 11296169 0.08881 0.04145
UniformOperator(CategoriesUniform.c:31) - 817349 10967316 0.08881 0.06936
UpDownOperator(relaxedUpDownOperator.c:31) 0.89556 654531 2879163 0.02664 0.18523
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
slurmstepd: error: *** STEP 11754837.0 ON exp-5-58 CANCELLED AT 2022-04-30T00:56:57 DUE TO TIME LIMIT ***