stderr.run5_copy_5.txt (4736 bytes)
File: infile.xml seed: 1651299117909 threads: 1
Loading package SNAPP v1.5.2
Loading package BDSKY v1.4.7
Loading package NS v1.1.0
Loading package substBMA v1.2.3
Loading package CA v2.0.0
Loading package PIQMEE v1.0.2
Loading package TreeStat2 v0.0.2
Loading package starbeast3 v1.0.3
Loading package Mascot v2.1.2
Loading package CoupledMCMC v1.0.2
Loading package SA v2.0.2
Loading package MODEL_SELECTION v1.5.3
Loading package BADTRIP v1.0.0
Loading package Babel v0.3.2
Loading package MGSM v0.3.0
Loading package CoalRe v0.0.7
Loading package snapper v1.0.2
Loading package phylodynamics v1.3.0
Loading package SpeciesNetwork v0.13.0
Loading package feast v7.10.0
Loading package starbeast2 v0.15.13
Loading package EpiInf v7.5.2
Loading package DENIM v1.0.1
Loading package ORC v1.0.3
Loading package PoMo v1.0.1
Loading package TMA v1.0.0
Loading package outercore v0.0.4
Loading package Beasy v0.0.2
Loading package BEASTvntr v0.1.3
Loading package flc v1.1.0
Loading package MASTER v6.1.2
Loading package BEASTLabs v1.9.7
Loading package BEAST_CLASSIC v1.5.0
Loading package FastRelaxedClockLogNormal v1.1.1
Loading package CodonSubstModels v1.1.3
Loading package STACEY v1.2.5
Loading package BEAST v2.6.6
Loading package besp v0.2.0
Loading package SCOTTI v2.0.1
Loading package BDMM v1.0
Loading package BASTA v3.0.1
Loading package OBAMA v0.2.0
Loading package MultiTypeTree v7.0.2
Loading package bModelTest v1.2.1
Loading package SSM v1.1.0
Loading package MM v1.1.1
Loading package BEAST v2.6.6
Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37306 711768 2098404 0.02664 0.25328
ScaleOperator(YuleModelTreeScaler.t:31) 0.93574 263495 2547354 0.02664 0.09374 Try setting scaleFactor to about 0.967
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.90563 275199 2535852 0.02664 0.09790 Try setting scaleFactor to about 0.952
Uniform(YuleModelUniformOperator.t:31) - 1602495 26507598 0.26643 0.05701
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.28320 8818748 5230226 0.13321 0.62771 Try increasing size to about 0.566
Exchange(YuleModelNarrow.t:31) - 30195 14021630 0.13321 0.00215
Exchange(YuleModelWide.t:31) - 156 2813165 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 122 2812785 0.02664 0.00004
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00924 17488 76361 0.00089 0.18634
ScaleOperator(RateACScaler.s:31) 0.84233 10433 82910 0.00089 0.11177
ScaleOperator(RateAGScaler.s:31) 0.85845 10163 84298 0.00089 0.10759
ScaleOperator(RateATScaler.s:31) 0.74928 10956 82424 0.00089 0.11733
ScaleOperator(RateCGScaler.s:31) 0.77418 11520 81987 0.00089 0.12320
ScaleOperator(RateGTScaler.s:31) 0.79495 8541 84568 0.00089 0.09173 Try setting scaleFactor to about 0.892
ScaleOperator(ucldMeanScaler.c:31) 0.92416 86217 849093 0.00888 0.09218 Try setting scaleFactor to about 0.961
ScaleOperator(ucldStdevScaler.c:31) 0.94890 446177 2366475 0.02664 0.15863
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 3290018 6076903 0.08881 0.35124
SwapOperator(CategoriesSwapOperator.c:31) - 382608 8985319 0.08881 0.04084
UniformOperator(CategoriesUniform.c:31) - 634853 8733449 0.08881 0.06777
UpDownOperator(relaxedUpDownOperator.c:31) 0.89439 524282 2283765 0.02664 0.18671
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11753750.0 ON exp-5-58 CANCELLED AT 2022-04-29T23:42:11 DUE TO TIME LIMIT ***