stderr.run15_copy_5.txt (4663 bytes)
File: infile.xml seed: 1651391305888 threads: 1
Loading package SNAPP v1.5.2
Loading package BDSKY v1.4.7
Loading package NS v1.1.0
Loading package substBMA v1.2.3
Loading package CA v2.0.0
Loading package PIQMEE v1.0.2
Loading package TreeStat2 v0.0.2
Loading package starbeast3 v1.0.4
Loading package Mascot v2.1.2
Loading package CoupledMCMC v1.0.2
Loading package SA v2.0.2
Loading package MODEL_SELECTION v1.5.3
Loading package BADTRIP v1.0.0
Loading package Babel v0.3.2
Loading package MGSM v0.3.0
Loading package CoalRe v0.0.7
Loading package snapper v1.0.2
Loading package phylodynamics v1.3.0
Loading package SpeciesNetwork v0.13.0
Loading package feast v7.10.0
Loading package starbeast2 v0.15.13
Loading package EpiInf v7.5.2
Loading package DENIM v1.0.1
Loading package ORC v1.0.3
Loading package PoMo v1.0.1
Loading package TMA v1.0.0
Loading package outercore v0.0.4
Loading package Beasy v0.0.2
Loading package BEASTvntr v0.1.3
Loading package flc v1.1.0
Loading package MASTER v6.1.2
Loading package BEASTLabs v1.9.7
Loading package BEAST_CLASSIC v1.5.0
Loading package FastRelaxedClockLogNormal v1.1.1
Loading package CodonSubstModels v1.1.3
Loading package STACEY v1.2.5
Loading package BEAST v2.6.6
Loading package besp v0.2.0
Loading package SCOTTI v2.0.1
Loading package BDMM v1.0
Loading package BASTA v3.0.1
Loading package OBAMA v0.2.0
Loading package MultiTypeTree v7.0.2
Loading package bModelTest v1.2.1
Loading package SSM v1.1.0
Loading package MM v1.1.1
Loading package BEAST v2.6.6
Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.38034 580140 1645632 0.02664 0.26065
ScaleOperator(YuleModelTreeScaler.t:31) 0.93574 212546 2011482 0.02664 0.09557 Try setting scaleFactor to about 0.967
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91556 184229 2038908 0.02664 0.08287 Try setting scaleFactor to about 0.957
Uniform(YuleModelUniformOperator.t:31) - 1296769 20951643 0.26643 0.05829
SubtreeSlide(YuleModelSubtreeSlide.t:31) 2.56215 2029694 9093258 0.13321 0.18248
Exchange(YuleModelNarrow.t:31) - 27449 11092299 0.13321 0.00247
Exchange(YuleModelWide.t:31) - 134 2226271 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 66 2225063 0.02664 0.00003
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00806 16304 57969 0.00089 0.21951
ScaleOperator(RateACScaler.s:31) 0.85962 9416 64580 0.00089 0.12725
ScaleOperator(RateAGScaler.s:31) 0.86340 8268 65605 0.00089 0.11192
ScaleOperator(RateATScaler.s:31) 0.79765 11561 62620 0.00089 0.15585
ScaleOperator(RateCGScaler.s:31) 0.81930 12278 62111 0.00089 0.16505
ScaleOperator(RateGTScaler.s:31) 0.84228 9652 64518 0.00089 0.13013
ScaleOperator(ucldMeanScaler.c:31) 0.92072 65346 676303 0.00888 0.08811 Try setting scaleFactor to about 0.96
ScaleOperator(ucldStdevScaler.c:31) 0.92377 254302 1971821 0.02664 0.11424
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 2758241 4648456 0.08881 0.37240
SwapOperator(CategoriesSwapOperator.c:31) - 312894 7103673 0.08881 0.04219
UniformOperator(CategoriesUniform.c:31) - 530377 6883405 0.08881 0.07154
UpDownOperator(relaxedUpDownOperator.c:31) 0.88353 402158 1822559 0.02664 0.18077
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11772087.0 ON exp-4-60 CANCELLED AT 2022-05-01T01:18:41 DUE TO TIME LIMIT ***