stderr.run8_copy_4.txt (4698 bytes)
File: infile.xml seed: 1651314467854 threads: 1
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Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37119 1254479 3746863 0.02664 0.25083
ScaleOperator(YuleModelTreeScaler.t:31) 0.93992 504649 4496916 0.02664 0.10090
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.91085 450515 4553552 0.02664 0.09003 Try setting scaleFactor to about 0.954
Uniform(YuleModelUniformOperator.t:31) - 2896030 47110695 0.26643 0.05791
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.35973 15915897 9091084 0.13321 0.63646 Try increasing size to about 0.719
Exchange(YuleModelNarrow.t:31) - 60218 24943290 0.13321 0.00241
Exchange(YuleModelWide.t:31) - 305 5004295 0.02664 0.00006
WilsonBalding(YuleModelWilsonBalding.t:31) - 228 5004754 0.02664 0.00005
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00906 32196 134796 0.00089 0.19280
ScaleOperator(RateACScaler.s:31) 0.85031 19693 146527 0.00089 0.11848
ScaleOperator(RateAGScaler.s:31) 0.86589 19326 148227 0.00089 0.11534
ScaleOperator(RateATScaler.s:31) 0.75995 20769 145463 0.00089 0.12494
ScaleOperator(RateCGScaler.s:31) 0.78355 21758 144638 0.00089 0.13076
ScaleOperator(RateGTScaler.s:31) 0.80661 16442 149570 0.00089 0.09904 Try setting scaleFactor to about 0.898
ScaleOperator(ucldMeanScaler.c:31) 0.92905 166548 1499021 0.00888 0.09999 Try setting scaleFactor to about 0.964
ScaleOperator(ucldStdevScaler.c:31) 0.95001 871820 4133864 0.02664 0.17417
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 6041947 10621929 0.08881 0.36258
SwapOperator(CategoriesSwapOperator.c:31) - 698948 15968446 0.08881 0.04194
UniformOperator(CategoriesUniform.c:31) - 1174749 15490620 0.08881 0.07049
UpDownOperator(relaxedUpDownOperator.c:31) 0.89712 928732 4070201 0.02664 0.18579
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11757291.0 ON exp-5-58 CANCELLED AT 2022-04-30T03:57:58 DUE TO TIME LIMIT ***