stderr.run3_copy_4.txt (4698 bytes)
File: infile.xml seed: 1651223770353 threads: 1
Loading package SNAPP v1.5.2
Loading package BDSKY v1.4.7
Loading package NS v1.1.0
Loading package substBMA v1.2.3
Loading package CA v2.0.0
Loading package PIQMEE v1.0.2
Loading package TreeStat2 v0.0.2
Loading package starbeast3 v1.0.3
Loading package Mascot v2.1.2
Loading package CoupledMCMC v1.0.2
Loading package SA v2.0.2
Loading package MODEL_SELECTION v1.5.3
Loading package BADTRIP v1.0.0
Loading package Babel v0.3.2
Loading package MGSM v0.3.0
Loading package CoalRe v0.0.7
Loading package snapper v1.0.2
Loading package phylodynamics v1.3.0
Loading package SpeciesNetwork v0.13.0
Loading package feast v7.10.0
Loading package starbeast2 v0.15.13
Loading package EpiInf v7.5.2
Loading package DENIM v1.0.1
Loading package ORC v1.0.3
Loading package PoMo v1.0.1
Loading package TMA v1.0.0
Loading package outercore v0.0.4
Loading package Beasy v0.0.2
Loading package BEASTvntr v0.1.3
Loading package flc v1.1.0
Loading package MASTER v6.1.2
Loading package BEASTLabs v1.9.7
Loading package BEAST_CLASSIC v1.5.0
Loading package FastRelaxedClockLogNormal v1.1.1
Loading package CodonSubstModels v1.1.3
Loading package STACEY v1.2.5
Loading package BEAST v2.6.6
Loading package besp v0.2.0
Loading package SCOTTI v2.0.1
Loading package BDMM v1.0
Loading package BASTA v3.0.1
Loading package OBAMA v0.2.0
Loading package MultiTypeTree v7.0.2
Loading package bModelTest v1.2.1
Loading package SSM v1.1.0
Loading package MM v1.1.1
Loading package BEAST v2.6.6
Ignoring ambiguities in tree likelihood.
Ignoring character uncertainty in tree likelihood.
With 10264 unique site patterns.
Using rescaling scheme : dynamic
Operator Tuning #accept #reject Pr(m) Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31) 0.37574 356442 1036608 0.02664 0.25587
ScaleOperator(YuleModelTreeScaler.t:31) 0.92993 119189 1275415 0.02664 0.08546 Try setting scaleFactor to about 0.964
ScaleOperator(YuleModelTreeRootScaler.t:31) 0.89948 155712 1238004 0.02664 0.11172
Uniform(YuleModelUniformOperator.t:31) - 763494 13178396 0.26643 0.05476
SubtreeSlide(YuleModelSubtreeSlide.t:31) 0.20060 3718542 3249420 0.13321 0.53366 Try increasing size to about 0.401
Exchange(YuleModelNarrow.t:31) - 8701 6960938 0.13321 0.00125
Exchange(YuleModelWide.t:31) - 46 1395288 0.02664 0.00003
WilsonBalding(YuleModelWilsonBalding.t:31) - 52 1394500 0.02664 0.00004
DeltaExchangeOperator(FrequenciesExchanger.s:31) 0.00951 8405 38189 0.00089 0.18039
ScaleOperator(RateACScaler.s:31) 0.83133 4736 41527 0.00089 0.10237
ScaleOperator(RateAGScaler.s:31) 0.84791 4689 41998 0.00089 0.10043
ScaleOperator(RateATScaler.s:31) 0.73451 4968 40992 0.00089 0.10809
ScaleOperator(RateCGScaler.s:31) 0.76145 5218 40996 0.00089 0.11291
ScaleOperator(RateGTScaler.s:31) 0.77908 3894 42422 0.00089 0.08407 Try setting scaleFactor to about 0.883
ScaleOperator(ucldMeanScaler.c:31) 0.91733 38693 425242 0.00888 0.08340 Try setting scaleFactor to about 0.958
ScaleOperator(ucldStdevScaler.c:31) 0.94750 171273 1222908 0.02664 0.12285
IntRandomWalkOperator(CategoriesRandomWalk.c:31) - 1507173 3138258 0.08881 0.32444
SwapOperator(CategoriesSwapOperator.c:31) - 181085 4463965 0.08881 0.03898
UniformOperator(CategoriesUniform.c:31) - 281941 4364085 0.08881 0.06068
UpDownOperator(relaxedUpDownOperator.c:31) 0.89104 266391 1125205 0.02664 0.19143
Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
#accept: The total number of times a proposal by this operator has been accepted.
#reject: The total number of times a proposal by this operator has been rejected.
Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11737254.0 ON exp-5-60 CANCELLED AT 2022-04-29T02:46:11 DUE TO TIME LIMIT ***