stderr.run4_copy_5.txt

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stderr.run4_copy_5.txt (4697 bytes)

File: infile.xml seed: 1651279413245 threads: 1
Loading package SNAPP v1.5.2
Loading package BDSKY v1.4.7
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  Ignoring ambiguities in tree likelihood.
  Ignoring character uncertainty in tree likelihood.
  With 10264 unique site patterns.
  Using rescaling scheme : dynamic
Operator                                             Tuning    #accept    #reject      Pr(m)  Pr(acc|m)
ScaleOperator(YuleBirthRateScaler.t:31)             0.37412     533182    1562675    0.02664    0.25440 
ScaleOperator(YuleModelTreeScaler.t:31)             0.93339     190116    1907960    0.02664    0.09061 Try setting scaleFactor to about 0.966
ScaleOperator(YuleModelTreeRootScaler.t:31)         0.90303     216012    1880124    0.02664    0.10305 
Uniform(YuleModelUniformOperator.t:31)                    -    1177726   19793762    0.26643    0.05616 
SubtreeSlide(YuleModelSubtreeSlide.t:31)            0.24688    6316033    4162395    0.13321    0.60277 Try increasing size to about 0.494
Exchange(YuleModelNarrow.t:31)                            -      19334   10461501    0.13321    0.00184 
Exchange(YuleModelWide.t:31)                              -        104    2098454    0.02664    0.00005 
WilsonBalding(YuleModelWilsonBalding.t:31)                -         82    2097489    0.02664    0.00004 
DeltaExchangeOperator(FrequenciesExchanger.s:31)    0.00934      12850      57240    0.00089    0.18334 
ScaleOperator(RateACScaler.s:31)                    0.83805       7471      62275    0.00089    0.10712 
ScaleOperator(RateAGScaler.s:31)                    0.85421       7373      63092    0.00089    0.10463 
ScaleOperator(RateATScaler.s:31)                    0.74346       7851      61726    0.00089    0.11284 
ScaleOperator(RateCGScaler.s:31)                    0.76903       8291      61422    0.00089    0.11893 
ScaleOperator(RateGTScaler.s:31)                    0.78851       6194      63412    0.00089    0.08899 Try setting scaleFactor to about 0.888
ScaleOperator(ucldMeanScaler.c:31)                  0.92143      61701     635800    0.00888    0.08846 Try setting scaleFactor to about 0.96
ScaleOperator(ucldStdevScaler.c:31)                 0.94840     303675    1793708    0.02664    0.14479 
IntRandomWalkOperator(CategoriesRandomWalk.c:31)          -    2384839    4603839    0.08881    0.34124 
SwapOperator(CategoriesSwapOperator.c:31)                 -     279071    6707951    0.08881    0.03994 
UniformOperator(CategoriesUniform.c:31)                   -     454894    6533795    0.08881    0.06509 
UpDownOperator(relaxedUpDownOperator.c:31)          0.89269     400507    1694074    0.02664    0.19121 

     Tuning: The value of the operator's tuning parameter, or '-' if the operator can't be optimized.
    #accept: The total number of times a proposal by this operator has been accepted.
    #reject: The total number of times a proposal by this operator has been rejected.
      Pr(m): The probability this operator is chosen in a step of the MCMC (i.e. the normalized weight).
  Pr(acc|m): The acceptance probability (#accept as a fraction of the total proposals for this operator).

srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 11744037.0 ON exp-6-59 CANCELLED AT 2022-04-29T18:13:32 DUE TO TIME LIMIT ***