partition_file.txt

partition_file.txt (500 bytes)

#nexus
begin sets;
  charset COI_Codon_1 = 1-655\3;
  charset COI_Codon_2 = 2-656\3;
  charset COI_Codon_3 = 3-657\3;
  charset CAD_Codon_1 = 658-1333\3;
  charset CAD_Codon_2 = 659-1334\3;
  charset CAD_Codon_3 = 660-1335\3;
  charset 28S__from_Phred_Phrap_ = 1336- 2450;
  charpartition mymodels =
    TNe+I+G4: COI_Codon_1,
    HKY+F+I: COI_Codon_2,
    TIM2+F+G4: COI_Codon_3,
    HKY+F+I: CAD_Codon_1,
    TN+F: CAD_Codon_2,
    HKY+F+G4: CAD_Codon_3,
    GTR+F+R2: 28S__from_Phred_Phrap_;
end;