stdout.txt (45426 bytes)
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
This is RAxML MPI Process Number: 5
This is RAxML MPI Process Number: 0
This is RAxML MPI Process Number: 3
This is RAxML MPI Process Number: 1
This is RAxML MPI Process Number: 2
This is RAxML MPI Process Number: 4
This is the RAxML Master Pthread
This is the RAxML Master Pthread
This is the RAxML Master Pthread
This is the RAxML Master Pthread
This is the RAxML Master Pthread
This is the RAxML Master Pthread
This is RAxML Worker Pthread Number: 2
This is RAxML Worker Pthread Number: 3
This is RAxML Worker Pthread Number: 2
This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 3
This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 3
This is RAxML Worker Pthread Number: 2
This is RAxML Worker Pthread Number: 2
This is RAxML Worker Pthread Number: 3
This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 2
This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 3
This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 2
This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 3
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
This is RAxML version 8.2.12 released by Alexandros Stamatakis on May 2018.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Kassian Kobert (HITS)
David Dao (KIT and HITS)
Sarah Lutteropp (KIT and HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor (UF)
Alignment has 17 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 0.00%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 1000 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
ML estimate of 25 per site rate categories
Likelihood of final tree will be evaluated and optimized under GAMMA
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 17
Name: No Name Provided
DataType: AA
Substitution Matrix: DAYHOFF
Using fixed base frequencies
RAxML was called as follows:
raxmlHPC-HYBRID -T 4 -s infile -N autoMRE -n result -f a -p 12345 -x 12345 -m PROTCATDAYHOFF
Time for BS model parameter optimization on Process 5: 0.000779 seconds
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Partition No Name Provided number 0 has a problem, the number of expected states is 20 the number of states that are present is 17.
Please go and fix your data!
Time for BS model parameter optimization on Process 2: 0.000775 seconds
Time for BS model parameter optimization on Process 3: 0.000845 seconds
Time for BS model parameter optimization on Process 4: 0.000784 seconds
Time for BS model parameter optimization on Process 1: 0.000834 seconds
Time for BS model parameter optimization on Process 0: 0.000818 seconds
Bootstrap[835]: Time 0.027670 seconds, bootstrap likelihood -100.234224, best rearrangement setting 6
Bootstrap[501]: Time 0.033689 seconds, bootstrap likelihood -112.231970, best rearrangement setting 9
Bootstrap[334]: Time 0.030539 seconds, bootstrap likelihood -152.543416, best rearrangement setting 10
Bootstrap[167]: Time 0.035280 seconds, bootstrap likelihood -146.373721, best rearrangement setting 12
Bootstrap[836]: Time 0.004927 seconds, bootstrap likelihood -107.617542, best rearrangement setting 15
Bootstrap[0]: Time 0.026597 seconds, bootstrap likelihood -127.783435, best rearrangement setting 13
Bootstrap[668]: Time 0.044886 seconds, bootstrap likelihood -126.516625, best rearrangement setting 8
Bootstrap[502]: Time 0.010091 seconds, bootstrap likelihood -113.602583, best rearrangement setting 14
Bootstrap[168]: Time 0.009192 seconds, bootstrap likelihood -96.918054, best rearrangement setting 13
Bootstrap[335]: Time 0.010500 seconds, bootstrap likelihood -134.952733, best rearrangement setting 13
Bootstrap[837]: Time 0.007833 seconds, bootstrap likelihood -129.767757, best rearrangement setting 6
Bootstrap[1]: Time 0.007643 seconds, bootstrap likelihood -111.177190, best rearrangement setting 13
Bootstrap[669]: Time 0.008578 seconds, bootstrap likelihood -116.527671, best rearrangement setting 14
Bootstrap[503]: Time 0.007206 seconds, bootstrap likelihood -129.956706, best rearrangement setting 15
Bootstrap[336]: Time 0.006376 seconds, bootstrap likelihood -104.187796, best rearrangement setting 14
Bootstrap[169]: Time 0.010148 seconds, bootstrap likelihood -113.572876, best rearrangement setting 13
Bootstrap[838]: Time 0.007409 seconds, bootstrap likelihood -117.629887, best rearrangement setting 13
Bootstrap[670]: Time 0.005129 seconds, bootstrap likelihood -104.202046, best rearrangement setting 5
Bootstrap[2]: Time 0.007515 seconds, bootstrap likelihood -94.966477, best rearrangement setting 12
Bootstrap[337]: Time 0.007587 seconds, bootstrap likelihood -100.002479, best rearrangement setting 8
Bootstrap[839]: Time 0.008436 seconds, bootstrap likelihood -132.136995, best rearrangement setting 14
Bootstrap[504]: Time 0.014893 seconds, bootstrap likelihood -141.572958, best rearrangement setting 10
Bootstrap[671]: Time 0.008333 seconds, bootstrap likelihood -103.647795, best rearrangement setting 11
Bootstrap[3]: Time 0.008254 seconds, bootstrap likelihood -106.860063, best rearrangement setting 15
Bootstrap[840]: Time 0.004071 seconds, bootstrap likelihood -87.594342, best rearrangement setting 5
Bootstrap[505]: Time 0.005939 seconds, bootstrap likelihood -100.687313, best rearrangement setting 10
Bootstrap[338]: Time 0.012947 seconds, bootstrap likelihood -112.710358, best rearrangement setting 14
Bootstrap[672]: Time 0.008690 seconds, bootstrap likelihood -127.658525, best rearrangement setting 6
Bootstrap[4]: Time 0.006775 seconds, bootstrap likelihood -98.273093, best rearrangement setting 10
Bootstrap[506]: Time 0.004517 seconds, bootstrap likelihood -97.959832, best rearrangement setting 13
Bootstrap[841]: Time 0.010745 seconds, bootstrap likelihood -107.070455, best rearrangement setting 5
Bootstrap[339]: Time 0.008203 seconds, bootstrap likelihood -115.786266, best rearrangement setting 12
Bootstrap[170]: Time 0.035963 seconds, bootstrap likelihood -111.453124, best rearrangement setting 6
Bootstrap[5]: Time 0.006966 seconds, bootstrap likelihood -113.241008, best rearrangement setting 10
Bootstrap[673]: Time 0.009675 seconds, bootstrap likelihood -119.714132, best rearrangement setting 15
Bootstrap[507]: Time 0.008225 seconds, bootstrap likelihood -111.657909, best rearrangement setting 7
Bootstrap[842]: Time 0.008163 seconds, bootstrap likelihood -130.809814, best rearrangement setting 11
Bootstrap[340]: Time 0.008209 seconds, bootstrap likelihood -122.821262, best rearrangement setting 14
Bootstrap[6]: Time 0.008716 seconds, bootstrap likelihood -96.233935, best rearrangement setting 6
Bootstrap[508]: Time 0.006226 seconds, bootstrap likelihood -111.139937, best rearrangement setting 10
Bootstrap[674]: Time 0.007484 seconds, bootstrap likelihood -110.537863, best rearrangement setting 11
Bootstrap[843]: Time 0.007991 seconds, bootstrap likelihood -132.648094, best rearrangement setting 14
Bootstrap[171]: Time 0.016578 seconds, bootstrap likelihood -103.454008, best rearrangement setting 7
Bootstrap[341]: Time 0.008055 seconds, bootstrap likelihood -142.300616, best rearrangement setting 15
Bootstrap[675]: Time 0.007035 seconds, bootstrap likelihood -113.344579, best rearrangement setting 5
Bootstrap[7]: Time 0.009505 seconds, bootstrap likelihood -115.046191, best rearrangement setting 14
Bootstrap[509]: Time 0.007175 seconds, bootstrap likelihood -138.682112, best rearrangement setting 10
Bootstrap[172]: Time 0.005897 seconds, bootstrap likelihood -100.801055, best rearrangement setting 11
Bootstrap[342]: Time 0.006686 seconds, bootstrap likelihood -118.329414, best rearrangement setting 9
Bootstrap[676]: Time 0.006736 seconds, bootstrap likelihood -105.745678, best rearrangement setting 12
Bootstrap[173]: Time 0.006982 seconds, bootstrap likelihood -122.109671, best rearrangement setting 10
Bootstrap[8]: Time 0.009474 seconds, bootstrap likelihood -137.543526, best rearrangement setting 5
Bootstrap[174]: Time 0.007287 seconds, bootstrap likelihood -127.800414, best rearrangement setting 9
Bootstrap[175]: Time 0.006672 seconds, bootstrap likelihood -124.635286, best rearrangement setting 7
Bootstrap[343]: Time 0.004111 seconds, bootstrap likelihood -76.773618, best rearrangement setting 6
Bootstrap[677]: Time 0.006463 seconds, bootstrap likelihood -97.844603, best rearrangement setting 6
Bootstrap[9]: Time 0.007687 seconds, bootstrap likelihood -96.627353, best rearrangement setting 7
Bootstrap[510]: Time 0.007788 seconds, bootstrap likelihood -123.662701, best rearrangement setting 12
Bootstrap[844]: Time 0.008245 seconds, bootstrap likelihood -97.696395, best rearrangement setting 11
Bootstrap[176]: Time 0.008732 seconds, bootstrap likelihood -104.842688, best rearrangement setting 12Bootstrap[344]: Time 0.007796 seconds, bootstrap likelihood -115.314274, best rearrangement setting 13
Bootstrap[845]: Time 0.006906 seconds, bootstrap likelihood -124.330922, best rearrangement setting 10
Bootstrap[511]: Time 0.008699 seconds, bootstrap likelihood -104.371677, best rearrangement setting 5
Bootstrap[678]: Time 0.012857 seconds, bootstrap likelihood -116.170323, best rearrangement setting 7
Bootstrap[345]: Time 0.008531 seconds, bootstrap likelihood -107.887902, best rearrangement setting 7
Bootstrap[177]: Time 0.007424 seconds, bootstrap likelihood -110.393166, best rearrangement setting 10
Bootstrap[10]: Time 0.013409 seconds, bootstrap likelihood -117.066772, best rearrangement setting 7
Bootstrap[846]: Time 0.006965 seconds, bootstrap likelihood -91.298787, best rearrangement setting 11
Bootstrap[512]: Time 0.008686 seconds, bootstrap likelihood -125.945804, best rearrangement setting 9
Bootstrap[346]: Time 0.010045 seconds, bootstrap likelihood -152.018413, best rearrangement setting 11
Bootstrap[679]: Time 0.011735 seconds, bootstrap likelihood -113.231046, best rearrangement setting 10
Bootstrap[178]: Time 0.008473 seconds, bootstrap likelihood -117.145402, best rearrangement setting 6
Bootstrap[11]: Time 0.006955 seconds, bootstrap likelihood -133.388312, best rearrangement setting 5
Bootstrap[847]: Time 0.009024 seconds, bootstrap likelihood -117.793248, best rearrangement setting 9
Bootstrap[513]: Time 0.008463 seconds, bootstrap likelihood -103.910997, best rearrangement setting 7
Bootstrap[347]: Time 0.006560 seconds, bootstrap likelihood -142.184533, best rearrangement setting 10
Bootstrap[12]: Time 0.005450 seconds, bootstrap likelihood -114.877538, best rearrangement setting 8
Bootstrap[680]: Time 0.009219 seconds, bootstrap likelihood -129.904636, best rearrangement setting 13
Bootstrap[848]: Time 0.007332 seconds, bootstrap likelihood -149.228682, best rearrangement setting 5
Bootstrap[514]: Time 0.006708 seconds, bootstrap likelihood -113.047540, best rearrangement setting 12
Bootstrap[179]: Time 0.015560 seconds, bootstrap likelihood -99.476921, best rearrangement setting 15
Bootstrap[348]: Time 0.007143 seconds, bootstrap likelihood -121.538917, best rearrangement setting 7
Bootstrap[13]: Time 0.007476 seconds, bootstrap likelihood -120.179845, best rearrangement setting 7
Bootstrap[681]: Time 0.007827 seconds, bootstrap likelihood -134.695351, best rearrangement setting 14
Bootstrap[849]: Time 0.009478 seconds, bootstrap likelihood -141.945820, best rearrangement setting 5
Bootstrap[515]: Time 0.007554 seconds, bootstrap likelihood -112.959610, best rearrangement setting 10
Bootstrap[180]: Time 0.005875 seconds, bootstrap likelihood -95.103652, best rearrangement setting 9
Bootstrap[349]: Time 0.004463 seconds, bootstrap likelihood -108.070500, best rearrangement setting 14
Bootstrap[14]: Time 0.008041 seconds, bootstrap likelihood -111.993314, best rearrangement setting 12
Bootstrap[850]: Time 0.006962 seconds, bootstrap likelihood -112.234915, best rearrangement setting 12
Bootstrap[682]: Time 0.009369 seconds, bootstrap likelihood -126.558993, best rearrangement setting 13
Bootstrap[516]: Time 0.008140 seconds, bootstrap likelihood -107.445176, best rearrangement setting 13
Bootstrap[350]: Time 0.005794 seconds, bootstrap likelihood -136.168891, best rearrangement setting 13Bootstrap[181]: Time 0.008273 seconds, bootstrap likelihood -156.040676, best rearrangement setting 15
Bootstrap[15]: Time 0.008958 seconds, bootstrap likelihood -105.448909, best rearrangement setting 15
Bootstrap[851]: Time 0.006354 seconds, bootstrap likelihood -123.145159, best rearrangement setting 9
Bootstrap[182]: Time 0.004744 seconds, bootstrap likelihood -110.427680, best rearrangement setting 14
Bootstrap[683]: Time 0.008669 seconds, bootstrap likelihood -118.516939, best rearrangement setting 13
Bootstrap[517]: Time 0.007804 seconds, bootstrap likelihood -134.035573, best rearrangement setting 8
Bootstrap[16]: Time 0.005531 seconds, bootstrap likelihood -105.955970, best rearrangement setting 12
Bootstrap[183]: Time 0.007269 seconds, bootstrap likelihood -105.309398, best rearrangement setting 7
Bootstrap[684]: Time 0.007042 seconds, bootstrap likelihood -117.678985, best rearrangement setting 14
Bootstrap[351]: Time 0.004598 seconds, bootstrap likelihood -94.655764, best rearrangement setting 12
Bootstrap[685]: Time 0.004854 seconds, bootstrap likelihood -124.860998, best rearrangement setting 12
Bootstrap[184]: Time 0.004843 seconds, bootstrap likelihood -93.334353, best rearrangement setting 12
Bootstrap[852]: Time 0.009379 seconds, bootstrap likelihood -124.217429, best rearrangement setting 12
Bootstrap[17]: Time 0.009440 seconds, bootstrap likelihood -130.676235, best rearrangement setting 12
Bootstrap[686]: Time 0.005539 seconds, bootstrap likelihood -95.634029, best rearrangement setting 9
Bootstrap[518]: Time 0.015231 seconds, bootstrap likelihood -132.333102, best rearrangement setting 12
Bootstrap[352]: Time 0.007847 seconds, bootstrap likelihood -136.291405, best rearrangement setting 12Bootstrap[185]: Time 0.005040 seconds, bootstrap likelihood -115.665778, best rearrangement setting 14
Bootstrap[853]: Time 0.008559 seconds, bootstrap likelihood -152.931034, best rearrangement setting 7
Bootstrap[18]: Time 0.008574 seconds, bootstrap likelihood -120.731648, best rearrangement setting 5
Bootstrap[519]: Time 0.007656 seconds, bootstrap likelihood -123.586448, best rearrangement setting 11
Bootstrap[186]: Time 0.007599 seconds, bootstrap likelihood -119.035044, best rearrangement setting 6
Bootstrap[353]: Time 0.008395 seconds, bootstrap likelihood -132.441966, best rearrangement setting 15
Bootstrap[19]: Time 0.005997 seconds, bootstrap likelihood -108.820873, best rearrangement setting 8
Bootstrap[854]: Time 0.008586 seconds, bootstrap likelihood -129.127067, best rearrangement setting 8
Bootstrap[687]: Time 0.015376 seconds, bootstrap likelihood -126.268378, best rearrangement setting 10
Bootstrap[520]: Time 0.007183 seconds, bootstrap likelihood -115.762645, best rearrangement setting 13
Bootstrap[187]: Time 0.005525 seconds, bootstrap likelihood -104.221439, best rearrangement setting 8
Bootstrap[354]: Time 0.006556 seconds, bootstrap likelihood -106.332982, best rearrangement setting 7
Bootstrap[20]: Time 0.006773 seconds, bootstrap likelihood -131.325520, best rearrangement setting 10
Bootstrap[855]: Time 0.006819 seconds, bootstrap likelihood -124.528965, best rearrangement setting 13
Bootstrap[688]: Time 0.008295 seconds, bootstrap likelihood -113.597612, best rearrangement setting 15
Bootstrap[521]: Time 0.006541 seconds, bootstrap likelihood -122.484418, best rearrangement setting 5
Bootstrap[188]: Time 0.008506 seconds, bootstrap likelihood -125.057068, best rearrangement setting 9
Bootstrap[21]: Time 0.006839 seconds, bootstrap likelihood -86.145523, best rearrangement setting 6
Bootstrap[856]: Time 0.007822 seconds, bootstrap likelihood -144.922561, best rearrangement setting 11
Bootstrap[689]: Time 0.006877 seconds, bootstrap likelihood -126.954213, best rearrangement setting 8
Bootstrap[355]: Time 0.014218 seconds, bootstrap likelihood -129.850253, best rearrangement setting 12
Bootstrap[522]: Time 0.008399 seconds, bootstrap likelihood -151.723785, best rearrangement setting 15
Bootstrap[189]: Time 0.007584 seconds, bootstrap likelihood -90.833284, best rearrangement setting 8
Bootstrap[22]: Time 0.006416 seconds, bootstrap likelihood -140.317637, best rearrangement setting 5
Bootstrap[857]: Time 0.007719 seconds, bootstrap likelihood -104.792027, best rearrangement setting 12
Bootstrap[356]: Time 0.007430 seconds, bootstrap likelihood -111.823809, best rearrangement setting 12
Bootstrap[523]: Time 0.007051 seconds, bootstrap likelihood -136.752241, best rearrangement setting 5
Bootstrap[190]: Time 0.005845 seconds, bootstrap likelihood -101.518065, best rearrangement setting 8
Bootstrap[858]: Time 0.007287 seconds, bootstrap likelihood -116.161381, best rearrangement setting 12
Bootstrap[524]: Time 0.005293 seconds, bootstrap likelihood -110.869909, best rearrangement setting 10
Bootstrap[357]: Time 0.007454 seconds, bootstrap likelihood -111.351695, best rearrangement setting 9
Bootstrap[23]: Time 0.013123 seconds, bootstrap likelihood -94.461980, best rearrangement setting 7
Bootstrap[191]: Time 0.007701 seconds, bootstrap likelihood -104.702718, best rearrangement setting 7
Bootstrap[690]: Time 0.028939 seconds, bootstrap likelihood -106.215387, best rearrangement setting 8
Bootstrap[525]: Time 0.008997 seconds, bootstrap likelihood -109.522861, best rearrangement setting 7
Bootstrap[358]: Time 0.007221 seconds, bootstrap likelihood -86.161842, best rearrangement setting 7Bootstrap[24]: Time 0.006941 seconds, bootstrap likelihood -98.844567, best rearrangement setting 8
Bootstrap[859]: Time 0.014879 seconds, bootstrap likelihood -99.025776, best rearrangement setting 6
Bootstrap[691]: Time 0.006380 seconds, bootstrap likelihood -94.754213, best rearrangement setting 11
Bootstrap[692]: Time 0.007348 seconds, bootstrap likelihood -128.380746, best rearrangement setting 7
Bootstrap[192]: Time 0.005212 seconds, bootstrap likelihood -120.991967, best rearrangement setting 7
Bootstrap[860]: Time 0.008061 seconds, bootstrap likelihood -86.435354, best rearrangement setting 12
Bootstrap[359]: Time 0.008600 seconds, bootstrap likelihood -98.391082, best rearrangement setting 9Bootstrap[25]: Time 0.008612 seconds, bootstrap likelihood -107.910701, best rearrangement setting 6
Bootstrap[526]: Time 0.008794 seconds, bootstrap likelihood -121.557998, best rearrangement setting 10
Bootstrap[693]: Time 0.008696 seconds, bootstrap likelihood -102.310844, best rearrangement setting 11
Bootstrap[193]: Time 0.004749 seconds, bootstrap likelihood -118.088727, best rearrangement setting 15
Bootstrap[861]: Time 0.008059 seconds, bootstrap likelihood -102.448082, best rearrangement setting 5
Bootstrap[26]: Time 0.008026 seconds, bootstrap likelihood -121.656009, best rearrangement setting 12
Bootstrap[360]: Time 0.008444 seconds, bootstrap likelihood -108.272496, best rearrangement setting 7
Bootstrap[694]: Time 0.006954 seconds, bootstrap likelihood -118.071712, best rearrangement setting 13
Bootstrap[194]: Time 0.007448 seconds, bootstrap likelihood -117.864167, best rearrangement setting 8
Bootstrap[527]: Time 0.010128 seconds, bootstrap likelihood -107.924174, best rearrangement setting 10
Bootstrap[862]: Time 0.007603 seconds, bootstrap likelihood -98.182673, best rearrangement setting 8
Bootstrap[27]: Time 0.007306 seconds, bootstrap likelihood -126.496631, best rearrangement setting 10
Bootstrap[361]: Time 0.009391 seconds, bootstrap likelihood -110.806644, best rearrangement setting 5
Bootstrap[195]: Time 0.005874 seconds, bootstrap likelihood -93.503746, best rearrangement setting 6
Bootstrap[695]: Time 0.009041 seconds, bootstrap likelihood -103.688669, best rearrangement setting 11
Bootstrap[863]: Time 0.004545 seconds, bootstrap likelihood -127.081933, best rearrangement setting 8
Bootstrap[528]: Time 0.009428 seconds, bootstrap likelihood -125.598736, best rearrangement setting 13
Bootstrap[28]: Time 0.007768 seconds, bootstrap likelihood -124.744345, best rearrangement setting 11
Bootstrap[864]: Time 0.004992 seconds, bootstrap likelihood -101.731456, best rearrangement setting 8
Bootstrap[362]: Time 0.008297 seconds, bootstrap likelihood -104.164917, best rearrangement setting 12
Bootstrap[196]: Time 0.008036 seconds, bootstrap likelihood -138.007209, best rearrangement setting 14
Bootstrap[696]: Time 0.010030 seconds, bootstrap likelihood -123.380815, best rearrangement setting 13
Bootstrap[529]: Time 0.011003 seconds, bootstrap likelihood -134.610678, best rearrangement setting 7
Bootstrap[29]: Time 0.009422 seconds, bootstrap likelihood -88.913450, best rearrangement setting 12
Bootstrap[197]: Time 0.008001 seconds, bootstrap likelihood -80.939286, best rearrangement setting 5
Bootstrap[363]: Time 0.010401 seconds, bootstrap likelihood -115.979160, best rearrangement setting 15
Bootstrap[865]: Time 0.019656 seconds, bootstrap likelihood -127.507033, best rearrangement setting 6
Bootstrap[697]: Time 0.007506 seconds, bootstrap likelihood -110.717948, best rearrangement setting 7
Bootstrap[530]: Time 0.008474 seconds, bootstrap likelihood -126.690120, best rearrangement setting 5
Bootstrap[364]: Time 0.004353 seconds, bootstrap likelihood -135.535353, best rearrangement setting 5
Bootstrap[198]: Time 0.005998 seconds, bootstrap likelihood -97.116152, best rearrangement setting 7
Bootstrap[866]: Time 0.007080 seconds, bootstrap likelihood -130.987403, best rearrangement setting 6
Bootstrap[30]: Time 0.012604 seconds, bootstrap likelihood -113.839304, best rearrangement setting 15
Bootstrap[698]: Time 0.007366 seconds, bootstrap likelihood -113.311573, best rearrangement setting 6
Bootstrap[365]: Time 0.005322 seconds, bootstrap likelihood -134.816454, best rearrangement setting 9
Bootstrap[531]: Time 0.008379 seconds, bootstrap likelihood -90.934039, best rearrangement setting 5
Bootstrap[199]: Time 0.005408 seconds, bootstrap likelihood -120.766702, best rearrangement setting 7
Bootstrap[31]: Time 0.004812 seconds, bootstrap likelihood -113.402247, best rearrangement setting 15
Bootstrap[699]: Time 0.007317 seconds, bootstrap likelihood -133.449482, best rearrangement setting 14
Bootstrap[867]: Time 0.010677 seconds, bootstrap likelihood -105.380656, best rearrangement setting 12
Bootstrap[32]: Time 0.006824 seconds, bootstrap likelihood -129.429747, best rearrangement setting 6
Bootstrap[200]: Time 0.008074 seconds, bootstrap likelihood -146.071801, best rearrangement setting 14
Bootstrap[366]: Time 0.016486 seconds, bootstrap likelihood -118.138389, best rearrangement setting 8
Bootstrap[532]: Time 0.015216 seconds, bootstrap likelihood -83.381376, best rearrangement setting 12
Bootstrap[700]: Time 0.008908 seconds, bootstrap likelihood -97.615062, best rearrangement setting 11
Bootstrap[868]: Time 0.007629 seconds, bootstrap likelihood -116.011302, best rearrangement setting 10
Bootstrap[33]: Time 0.010225 seconds, bootstrap likelihood -108.706746, best rearrangement setting 15
Bootstrap[367]: Time 0.007606 seconds, bootstrap likelihood -142.446959, best rearrangement setting 13
Bootstrap[533]: Time 0.007276 seconds, bootstrap likelihood -118.223300, best rearrangement setting 10
Bootstrap[701]: Time 0.007109 seconds, bootstrap likelihood -127.142002, best rearrangement setting 11
Bootstrap[534]: Time 0.004447 seconds, bootstrap likelihood -117.115576, best rearrangement setting 12
Bootstrap[201]: Time 0.005995 seconds, bootstrap likelihood -123.180581, best rearrangement setting 8
Bootstrap[34]: Time 0.006399 seconds, bootstrap likelihood -112.631470, best rearrangement setting 11
Bootstrap[702]: Time 0.007406 seconds, bootstrap likelihood -100.271300, best rearrangement setting 10
Bootstrap[535]: Time 0.007696 seconds, bootstrap likelihood -116.135908, best rearrangement setting 13
Bootstrap[869]: Time 0.008251 seconds, bootstrap likelihood -113.135255, best rearrangement setting 8
Bootstrap[368]: Time 0.009882 seconds, bootstrap likelihood -93.722235, best rearrangement setting 5
Bootstrap[202]: Time 0.007997 seconds, bootstrap likelihood -88.183076, best rearrangement setting 14Bootstrap[35]: Time 0.007078 seconds, bootstrap likelihood -101.138306, best rearrangement setting 8
Bootstrap[536]: Time 0.005876 seconds, bootstrap likelihood -96.175316, best rearrangement setting 13
Bootstrap[703]: Time 0.012301 seconds, bootstrap likelihood -104.550318, best rearrangement setting 8
Bootstrap[36]: Time 0.004370 seconds, bootstrap likelihood -109.704416, best rearrangement setting 9
Bootstrap[870]: Time 0.007961 seconds, bootstrap likelihood -123.226480, best rearrangement setting 13
Bootstrap[537]: Time 0.004655 seconds, bootstrap likelihood -98.675990, best rearrangement setting 11
Bootstrap[369]: Time 0.009681 seconds, bootstrap likelihood -121.870839, best rearrangement setting 8
Bootstrap[203]: Time 0.006723 seconds, bootstrap likelihood -120.561641, best rearrangement setting 6
Bootstrap[704]: Time 0.008766 seconds, bootstrap likelihood -139.852754, best rearrangement setting 9
Bootstrap[37]: Time 0.009872 seconds, bootstrap likelihood -113.553599, best rearrangement setting 11
Bootstrap[871]: Time 0.008115 seconds, bootstrap likelihood -86.103694, best rearrangement setting 6
Bootstrap[538]: Time 0.007751 seconds, bootstrap likelihood -138.250907, best rearrangement setting 12
Bootstrap[370]: Time 0.011037 seconds, bootstrap likelihood -133.317405, best rearrangement setting 14
Bootstrap[204]: Time 0.008191 seconds, bootstrap likelihood -106.878963, best rearrangement setting 11
Bootstrap[705]: Time 0.008375 seconds, bootstrap likelihood -94.485814, best rearrangement setting 12
Bootstrap[38]: Time 0.008740 seconds, bootstrap likelihood -133.493984, best rearrangement setting 8
Bootstrap[371]: Time 0.005716 seconds, bootstrap likelihood -115.632119, best rearrangement setting 11
Bootstrap[539]: Time 0.008272 seconds, bootstrap likelihood -104.330055, best rearrangement setting 13
Bootstrap[706]: Time 0.004950 seconds, bootstrap likelihood -116.007450, best rearrangement setting 7
Bootstrap[205]: Time 0.008250 seconds, bootstrap likelihood -133.688062, best rearrangement setting 13
Bootstrap[39]: Time 0.007216 seconds, bootstrap likelihood -99.358861, best rearrangement setting 13
Bootstrap[540]: Time 0.005684 seconds, bootstrap likelihood -127.640295, best rearrangement setting 8
Bootstrap[372]: Time 0.008877 seconds, bootstrap likelihood -120.342540, best rearrangement setting 7
Bootstrap[872]: Time 0.018425 seconds, bootstrap likelihood -104.503281, best rearrangement setting 12
Bootstrap[707]: Time 0.008413 seconds, bootstrap likelihood -140.096011, best rearrangement setting 9
Bootstrap[206]: Time 0.007446 seconds, bootstrap likelihood -111.346138, best rearrangement setting 15Bootstrap[40]: Time 0.007050 seconds, bootstrap likelihood -111.680996, best rearrangement setting 13
Bootstrap[541]: Time 0.007581 seconds, bootstrap likelihood -120.131725, best rearrangement setting 13
Bootstrap[873]: Time 0.007602 seconds, bootstrap likelihood -120.930009, best rearrangement setting 12
Bootstrap[708]: Time 0.007457 seconds, bootstrap likelihood -123.364095, best rearrangement setting 13
Bootstrap[41]: Time 0.007040 seconds, bootstrap likelihood -124.517028, best rearrangement setting 10
Bootstrap[373]: Time 0.013107 seconds, bootstrap likelihood -101.014230, best rearrangement setting 6
Bootstrap[207]: Time 0.006728 seconds, bootstrap likelihood -126.750941, best rearrangement setting 13
Bootstrap[874]: Time 0.006539 seconds, bootstrap likelihood -98.279961, best rearrangement setting 11
Bootstrap[542]: Time 0.009531 seconds, bootstrap likelihood -138.414637, best rearrangement setting 8
Bootstrap[374]: Time 0.008246 seconds, bootstrap likelihood -107.014533, best rearrangement setting 13
Bootstrap[208]: Time 0.006919 seconds, bootstrap likelihood -137.266942, best rearrangement setting 13Bootstrap[709]: Time 0.012858 seconds, bootstrap likelihood -116.925671, best rearrangement setting 11
Bootstrap[875]: Time 0.007458 seconds, bootstrap likelihood -103.118358, best rearrangement setting 13
Bootstrap[375]: Time 0.004765 seconds, bootstrap likelihood -122.803617, best rearrangement setting 5
Bootstrap[876]: Time 0.008098 seconds, bootstrap likelihood -113.388986, best rearrangement setting 14
Bootstrap[209]: Time 0.005214 seconds, bootstrap likelihood -95.619899, best rearrangement setting 15
Bootstrap[543]: Time 0.006901 seconds, bootstrap likelihood -144.055311, best rearrangement setting 11
Bootstrap[877]: Time 0.005551 seconds, bootstrap likelihood -97.813121, best rearrangement setting 8
Bootstrap[42]: Time 0.008215 seconds, bootstrap likelihood -104.777114, best rearrangement setting 5
Bootstrap[710]: Time 0.009069 seconds, bootstrap likelihood -133.299708, best rearrangement setting 10
Bootstrap[376]: Time 0.009436 seconds, bootstrap likelihood -134.671976, best rearrangement setting 13
Bootstrap[210]: Time 0.006557 seconds, bootstrap likelihood -134.387361, best rearrangement setting 10
Bootstrap[878]: Time 0.006825 seconds, bootstrap likelihood -116.824801, best rearrangement setting 8
Bootstrap[43]: Time 0.006847 seconds, bootstrap likelihood -92.527012, best rearrangement setting 14
Bootstrap[544]: Time 0.009739 seconds, bootstrap likelihood -120.448529, best rearrangement setting 14
Bootstrap[711]: Time 0.006696 seconds, bootstrap likelihood -109.769312, best rearrangement setting 11
Bootstrap[211]: Time 0.007102 seconds, bootstrap likelihood -100.928483, best rearrangement setting 14
Bootstrap[377]: Time 0.008175 seconds, bootstrap likelihood -106.145825, best rearrangement setting 7
Bootstrap[879]: Time 0.010397 seconds, bootstrap likelihood -115.982236, best rearrangement setting 6
Bootstrap[44]: Time 0.007573 seconds, bootstrap likelihood -126.205255, best rearrangement setting 10
Bootstrap[545]: Time 0.004762 seconds, bootstrap likelihood -106.889726, best rearrangement setting 10
Bootstrap[712]: Time 0.009269 seconds, bootstrap likelihood -123.590546, best rearrangement setting 14
Bootstrap[212]: Time 0.007693 seconds, bootstrap likelihood -115.342723, best rearrangement setting 5
Bootstrap[378]: Time 0.008063 seconds, bootstrap likelihood -103.190019, best rearrangement setting 7
Bootstrap[880]: Time 0.010137 seconds, bootstrap likelihood -125.300664, best rearrangement setting 9
Bootstrap[45]: Time 0.008754 seconds, bootstrap likelihood -135.845373, best rearrangement setting 15
Bootstrap[546]: Time 0.008370 seconds, bootstrap likelihood -114.062961, best rearrangement setting 7
Bootstrap[713]: Time 0.008136 seconds, bootstrap likelihood -134.368536, best rearrangement setting 8
Bootstrap[213]: Time 0.006684 seconds, bootstrap likelihood -101.567273, best rearrangement setting 13
Bootstrap[881]: Time 0.006810 seconds, bootstrap likelihood -102.707025, best rearrangement setting 8
Bootstrap[379]: Time 0.008920 seconds, bootstrap likelihood -108.540380, best rearrangement setting 6
Bootstrap[547]: Time 0.006590 seconds, bootstrap likelihood -87.286018, best rearrangement setting 10
Bootstrap[46]: Time 0.010702 seconds, bootstrap likelihood -113.726482, best rearrangement setting 14
Bootstrap[214]: Time 0.007118 seconds, bootstrap likelihood -96.064925, best rearrangement setting 13
Bootstrap[714]: Time 0.007735 seconds, bootstrap likelihood -92.408589, best rearrangement setting 9
Bootstrap[882]: Time 0.006843 seconds, bootstrap likelihood -114.509461, best rearrangement setting 12
Bootstrap[380]: Time 0.008155 seconds, bootstrap likelihood -144.063788, best rearrangement setting 11
Bootstrap[548]: Time 0.007830 seconds, bootstrap likelihood -107.327649, best rearrangement setting 13
Bootstrap[47]: Time 0.007064 seconds, bootstrap likelihood -108.851575, best rearrangement setting 8
Bootstrap[715]: Time 0.008507 seconds, bootstrap likelihood -146.260600, best rearrangement setting 7
Bootstrap[215]: Time 0.010436 seconds, bootstrap likelihood -128.945852, best rearrangement setting 14
Bootstrap[883]: Time 0.008965 seconds, bootstrap likelihood -117.249895, best rearrangement setting 10
Bootstrap[381]: Time 0.008386 seconds, bootstrap likelihood -100.430228, best rearrangement setting 8
Bootstrap[549]: Time 0.008726 seconds, bootstrap likelihood -150.070273, best rearrangement setting 6
Bootstrap[884]: Time 0.004461 seconds, bootstrap likelihood -92.343708, best rearrangement setting 11
Bootstrap[48]: Time 0.011696 seconds, bootstrap likelihood -124.506662, best rearrangement setting 6
Bootstrap[216]: Time 0.009444 seconds, bootstrap likelihood -143.966384, best rearrangement setting 5
Bootstrap[716]: Time 0.011604 seconds, bootstrap likelihood -97.260784, best rearrangement setting 14
Bootstrap[382]: Time 0.006864 seconds, bootstrap likelihood -132.353049, best rearrangement setting 10Bootstrap[550]: Time 0.006843 seconds, bootstrap likelihood -94.555467, best rearrangement setting 14
Bootstrap[49]: Time 0.006267 seconds, bootstrap likelihood -131.723535, best rearrangement setting 7
Bootstrap[717]: Time 0.008205 seconds, bootstrap likelihood -116.423663, best rearrangement setting 12
Bootstrap[383]: Time 0.005487 seconds, bootstrap likelihood -107.081334, best rearrangement setting 15
Stopped Rapid BS search after 300 replicates with MRE-based Bootstopping criterion
WRF Average of 100 random splits: 1.071895 %
Overall Time for 300 Rapid Bootstraps 0.822647 seconds
Average Time per Rapid Bootstrap 0.002742 seconds
Starting ML Search ...
Fast ML search on Process 3: Time 0.035337 seconds
Fast ML search on Process 5: Time 0.036420 seconds
Fast ML search on Process 2: Time 0.036779 seconds
Fast ML search on Process 4: Time 0.038866 seconds
Fast ML search on Process 1: Time 0.039168 seconds
Fast ML optimization finished
Fast ML search on Process 0: Time 0.044273 seconds
Slow ML Search 501 Likelihood: -130.015168
Slow ML Search 835 Likelihood: -130.015168
Slow ML Search 502 Likelihood: -130.015168
Slow ML Search 334 Likelihood: -130.015168Slow ML Search 668 Likelihood: -130.015168
Slow ML Search 836 Likelihood: -130.015168
Slow ML Search 167 Likelihood: -130.015168
Slow ML Search 335 Likelihood: -130.015168
Slow ML search on Process 3: Time 0.027288 seconds
Slow ML Search 669 Likelihood: -130.015168
Slow ML search on Process 5: Time 0.030911 seconds
Slow ML Search 168 Likelihood: -130.015168
Slow ML search on Process 2: Time 0.032636 seconds
Slow ML search on Process 4: Time 0.032592 seconds
Slow ML Search 0 Likelihood: -130.015168
Slow ML search on Process 1: Time 0.035200 seconds
Slow ML Search 1 Likelihood: -130.015168
Slow ML optimization finished
Thorough ML search on Process 3: Time 0.012915 seconds
Slow ML search on Process 0: Time 0.031019 seconds
processID = 3, bestLH = -130.015168
Thorough ML search on Process 5: Time 0.012751 seconds
processID = 5, bestLH = -130.015168
Thorough ML search on Process 2: Time 0.012971 seconds
processID = 2, bestLH = -130.015168
Thorough ML search on Process 4: Time 0.013421 seconds
processID = 4, bestLH = -130.015168
Thorough ML search on Process 1: Time 0.013065 seconds
processID = 1, bestLH = -130.015168
Thorough ML search on Process 0: Time 0.013375 seconds
processID = 0, bestLH = -130.015168
Final ML Optimization Likelihood: -130.015168
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: AA
alpha: 0.846686
Tree-Length: 0.746939
rate A <-> R: 0.234172
rate A <-> N: 0.849957
rate A <-> D: 1.040763
rate A <-> C: 0.312229
rate A <-> Q: 0.771899
rate A <-> E: 1.717259
rate A <-> G: 2.081526
rate A <-> H: 0.199480
rate A <-> I: 0.563747
rate A <-> L: 0.355594
rate A <-> K: 0.225499
rate A <-> M: 0.624458
rate A <-> F: 0.156114
rate A <-> P: 2.168257
rate A <-> S: 3.547268
rate A <-> T: 3.217693
rate A <-> W: 0.000000
rate A <-> Y: 0.208153
rate A <-> V: 1.803990
rate R <-> N: 0.277537
rate R <-> D: 0.000000
rate R <-> C: 0.199480
rate R <-> Q: 2.133565
rate R <-> E: 0.008673
rate R <-> G: 0.078057
rate R <-> H: 2.081526
rate R <-> I: 0.555074
rate R <-> L: 0.130095
rate R <-> K: 4.024284
rate R <-> M: 0.780572
rate R <-> F: 0.121422
rate R <-> P: 0.893322
rate R <-> S: 1.335646
rate R <-> T: 0.225499
rate R <-> W: 1.743278
rate R <-> Y: 0.069384
rate R <-> V: 0.208153
rate N <-> D: 7.849089
rate N <-> C: 0.000000
rate N <-> Q: 0.893322
rate N <-> E: 1.283608
rate N <-> G: 1.205551
rate N <-> H: 4.640069
rate N <-> I: 0.667823
rate N <-> L: 0.294883
rate N <-> K: 2.758023
rate N <-> M: 0.008673
rate N <-> F: 0.121422
rate N <-> P: 0.364267
rate N <-> S: 4.293148
rate N <-> T: 1.986123
rate N <-> W: 0.199480
rate N <-> Y: 0.823938
rate N <-> V: 0.130095
rate D <-> C: 0.000000
rate D <-> Q: 1.162186
rate D <-> E: 10.000000
rate D <-> G: 1.084128
rate D <-> H: 0.745880
rate D <-> I: 0.208153
rate D <-> L: 0.000000
rate D <-> K: 0.615785
rate D <-> M: 0.000000
rate D <-> F: 0.000000
rate D <-> P: 0.112749
rate D <-> S: 0.823938
rate D <-> T: 0.572420
rate D <-> W: 0.000000
rate D <-> Y: 0.000000
rate D <-> V: 0.156114
rate C <-> Q: 0.000000
rate C <-> E: 0.000000
rate C <-> G: 0.095403
rate C <-> H: 0.242845
rate C <-> I: 0.381613
rate C <-> L: 0.000000
rate C <-> K: 0.000000
rate C <-> M: 0.000000
rate C <-> F: 0.000000
rate C <-> P: 0.164788
rate C <-> S: 1.396357
rate C <-> T: 0.138768
rate C <-> W: 0.000000
rate C <-> Y: 0.832611
rate C <-> V: 0.424978
rate Q <-> E: 6.209887
rate Q <-> G: 0.242845
rate Q <-> H: 5.255854
rate Q <-> I: 0.156114
rate Q <-> L: 0.633131
rate Q <-> K: 1.326973
rate Q <-> M: 0.988725
rate Q <-> F: 0.000000
rate Q <-> P: 1.326973
rate Q <-> S: 0.485690
rate Q <-> T: 0.459670
rate Q <-> W: 0.000000
rate Q <-> Y: 0.000000
rate Q <-> V: 0.303556
rate E <-> G: 0.702515
rate E <-> H: 0.372940
rate E <-> I: 0.529055
rate E <-> L: 0.095403
rate E <-> K: 0.719861
rate E <-> M: 0.260191
rate E <-> F: 0.000000
rate E <-> P: 0.442324
rate E <-> S: 0.685169
rate E <-> T: 0.294883
rate E <-> W: 0.000000
rate E <-> Y: 0.190807
rate E <-> V: 0.320902
rate G <-> H: 0.086730
rate G <-> I: 0.000000
rate G <-> L: 0.060711
rate G <-> K: 0.234172
rate G <-> M: 0.147441
rate G <-> F: 0.130095
rate G <-> P: 0.294883
rate G <-> S: 2.029488
rate G <-> T: 0.260191
rate G <-> W: 0.000000
rate G <-> Y: 0.000000
rate G <-> V: 0.468343
rate H <-> I: 0.060711
rate H <-> L: 0.381613
rate H <-> K: 0.225499
rate H <-> M: 0.000000
rate H <-> F: 0.416305
rate H <-> P: 0.815265
rate H <-> S: 0.303556
rate H <-> T: 0.190807
rate H <-> W: 0.234172
rate H <-> Y: 1.101474
rate H <-> V: 0.381613
rate I <-> L: 2.228968
rate I <-> K: 0.398959
rate I <-> M: 2.914137
rate I <-> F: 1.699913
rate I <-> P: 0.104076
rate I <-> S: 0.208153
rate I <-> T: 1.665221
rate I <-> W: 0.000000
rate I <-> Y: 0.320902
rate I <-> V: 7.710321
rate L <-> K: 0.156114
rate L <-> M: 4.570685
rate L <-> F: 1.361665
rate L <-> P: 0.277537
rate L <-> S: 0.147441
rate L <-> T: 0.286210
rate L <-> W: 0.398959
rate L <-> Y: 0.242845
rate L <-> V: 1.517780
rate K <-> M: 2.107546
rate K <-> F: 0.000000
rate K <-> P: 0.286210
rate K <-> S: 0.832611
rate K <-> T: 1.179532
rate K <-> W: 0.000000
rate K <-> Y: 0.112749
rate K <-> V: 0.086730
rate M <-> F: 0.797918
rate M <-> P: 0.147441
rate M <-> S: 0.537728
rate M <-> T: 0.901995
rate M <-> W: 0.000000
rate M <-> Y: 0.000000
rate M <-> V: 2.237641
rate F <-> P: 0.095403
rate F <-> S: 0.398959
rate F <-> T: 0.112749
rate F <-> W: 0.659150
rate F <-> Y: 6.053773
rate F <-> V: 0.104076
rate P <-> S: 2.124892
rate P <-> T: 0.676496
rate P <-> W: 0.000000
rate P <-> Y: 0.000000
rate P <-> V: 0.416305
rate S <-> T: 4.770165
rate S <-> W: 0.650477
rate S <-> Y: 0.294883
rate S <-> V: 0.260191
rate T <-> W: 0.000000
rate T <-> Y: 0.364267
rate T <-> V: 1.361665
rate W <-> Y: 0.529055
rate W <-> V: 0.000000
rate Y <-> V: 0.242845
freq pi(A): 0.087127
freq pi(R): 0.040904
freq pi(N): 0.040432
freq pi(D): 0.046872
freq pi(C): 0.033474
freq pi(Q): 0.038255
freq pi(E): 0.049530
freq pi(G): 0.088612
freq pi(H): 0.033618
freq pi(I): 0.036886
freq pi(L): 0.085357
freq pi(K): 0.080482
freq pi(M): 0.014753
freq pi(F): 0.039772
freq pi(P): 0.050680
freq pi(S): 0.069577
freq pi(T): 0.058542
freq pi(W): 0.010494
freq pi(Y): 0.029916
freq pi(V): 0.064717
ML search took 0.640950 secs or 0.000178 hours
Combined Bootstrap and ML search took 1.467399 secs or 0.000408 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_bestTree.result
Found 1 tree in File /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_bestTree.result
Program execution info written to /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_info.result
All 300 bootstrapped trees written to: /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_bootstrap.result
Best-scoring ML tree written to: /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_bestTree.result
Best-scoring ML tree with support values written to: /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_bipartitions.result
Best-scoring ML tree with support values as branch labels written to: /projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-RAXMLHPC2BB-A839A22ECB44461AA01C19670E72718F/RAxML_bipartitionsBranchLabels.result
Overall execution time for full ML analysis: 1.491502 secs or 0.000414 hours or 0.000017 days