_NODEINFO.TXT (9809 bytes)
Mon Mar 23 12:09:02 PDT 2020
instance id: i-0fd4ed0f1471f8e2e
hostname
comet-121-10
lscpu
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 32
On-line CPU(s) list: 0-31
Thread(s) per core: 2
Core(s) per socket: 16
Socket(s): 1
NUMA node(s): 1
Vendor ID: GenuineIntel
CPU family: 6
Model: 79
Model name: Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz
Stepping: 1
CPU MHz: 2699.523
CPU max MHz: 3000.0000
CPU min MHz: 1200.0000
BogoMIPS: 4600.16
Hypervisor vendor: Xen
Virtualization type: full
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 46080K
NUMA node0 CPU(s): 0-31
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology nonstop_tsc aperfmperf eagerfpu pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx xsaveopt
-----------------------
lstopo-no-graphics
Machine (240GB)
Package L#0 + L3 L#0 (45MB)
L2 L#0 (256KB) + L1d L#0 (32KB) + L1i L#0 (32KB) + Core L#0
PU L#0 (P#0)
PU L#1 (P#16)
L2 L#1 (256KB) + L1d L#1 (32KB) + L1i L#1 (32KB) + Core L#1
PU L#2 (P#1)
PU L#3 (P#17)
L2 L#2 (256KB) + L1d L#2 (32KB) + L1i L#2 (32KB) + Core L#2
PU L#4 (P#2)
PU L#5 (P#18)
L2 L#3 (256KB) + L1d L#3 (32KB) + L1i L#3 (32KB) + Core L#3
PU L#6 (P#3)
PU L#7 (P#19)
L2 L#4 (256KB) + L1d L#4 (32KB) + L1i L#4 (32KB) + Core L#4
PU L#8 (P#4)
PU L#9 (P#20)
L2 L#5 (256KB) + L1d L#5 (32KB) + L1i L#5 (32KB) + Core L#5
PU L#10 (P#5)
PU L#11 (P#21)
L2 L#6 (256KB) + L1d L#6 (32KB) + L1i L#6 (32KB) + Core L#6
PU L#12 (P#6)
PU L#13 (P#22)
L2 L#7 (256KB) + L1d L#7 (32KB) + L1i L#7 (32KB) + Core L#7
PU L#14 (P#7)
PU L#15 (P#23)
L2 L#8 (256KB) + L1d L#8 (32KB) + L1i L#8 (32KB) + Core L#8
PU L#16 (P#8)
PU L#17 (P#24)
L2 L#9 (256KB) + L1d L#9 (32KB) + L1i L#9 (32KB) + Core L#9
PU L#18 (P#9)
PU L#19 (P#25)
L2 L#10 (256KB) + L1d L#10 (32KB) + L1i L#10 (32KB) + Core L#10
PU L#20 (P#10)
PU L#21 (P#26)
L2 L#11 (256KB) + L1d L#11 (32KB) + L1i L#11 (32KB) + Core L#11
PU L#22 (P#11)
PU L#23 (P#27)
L2 L#12 (256KB) + L1d L#12 (32KB) + L1i L#12 (32KB) + Core L#12
PU L#24 (P#12)
PU L#25 (P#28)
L2 L#13 (256KB) + L1d L#13 (32KB) + L1i L#13 (32KB) + Core L#13
PU L#26 (P#13)
PU L#27 (P#29)
L2 L#14 (256KB) + L1d L#14 (32KB) + L1i L#14 (32KB) + Core L#14
PU L#28 (P#14)
PU L#29 (P#30)
L2 L#15 (256KB) + L1d L#15 (32KB) + L1i L#15 (32KB) + Core L#15
PU L#30 (P#15)
PU L#31 (P#31)
HostBridge L#0
PCI 8086:7010
PCI 1013:00b8
GPU L#0 "card4"
GPU L#1 "controlD68"
PCI 1d0f:ec20
Net L#2 "ens3"
PCI 10de:1db1
GPU L#3 "card0"
GPU L#4 "renderD128"
PCI 10de:1db1
GPU L#5 "card1"
GPU L#6 "renderD129"
PCI 10de:1db1
GPU L#7 "card2"
GPU L#8 "renderD130"
PCI 10de:1db1
GPU L#9 "card3"
GPU L#10 "renderD131"
-----------------------
nvidia-smi
Mon Mar 23 12:09:04 2020
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 418.87.00 Driver Version: 418.87.00 CUDA Version: 10.1 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 Tesla V100-SXM2... On | 00000000:00:1B.0 Off | 0 |
| N/A 31C P0 35W / 300W | 0MiB / 16130MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
| 1 Tesla V100-SXM2... On | 00000000:00:1C.0 Off | 0 |
| N/A 30C P0 36W / 300W | 0MiB / 16130MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
| 2 Tesla V100-SXM2... On | 00000000:00:1D.0 Off | 0 |
| N/A 30C P0 37W / 300W | 0MiB / 16130MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
| 3 Tesla V100-SXM2... On | 00000000:00:1E.0 Off | 0 |
| N/A 30C P0 39W / 300W | 0MiB / 16130MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| No running processes found |
+-----------------------------------------------------------------------------+
-----------------------
singularity --version
singularity version 3.2.1-1.1.el7
-----------------------
singularity buildcfg
PACKAGE_NAME=singularity
PACKAGE_VERSION=3.2.1-1.1.el7
BUILDDIR=/builddir/build/BUILD/singularity-3.2.1/gopath/src/github.com/sylabs/singularity/builddir
PREFIX=/usr
EXECPREFIX=/usr
BINDIR=/usr/bin
SBINDIR=/usr/sbin
LIBEXECDIR=/usr/libexec
DATAROOTDIR=/usr/share
DATADIR=/usr/share
SYSCONFDIR=/etc
SHAREDSTATEDIR=/var/lib
LOCALSTATEDIR=/var
RUNSTATEDIR=/var/run
INCLUDEDIR=/usr/include
DOCDIR=/usr/share/doc/singularity
INFODIR=/usr/share/info
LIBDIR=/usr/lib64
LOCALEDIR=/usr/share/locale
MANDIR=/usr/share/man
SINGULARITY_CONFDIR=/etc/singularity
SESSIONDIR=/var/singularity/mnt/session
-----------------------
beagle info
singularity exec --bind /projects --nv /projects/ps-ngbt/home/cipres/ngbw/aws/beast2-v2.6.1-gpu-20200206.simg beast -threads 4 -instances 4 -beagle_GPU -beagle_order 1,2,3,4 -beagle_scaling dynamic -beagle_info
BEAST v2.6.1, 2002-2019
Bayesian Evolutionary Analysis Sampling Trees
Designed and developed by
Remco Bouckaert, Alexei J. Drummond, Andrew Rambaut & Marc A. Suchard
Centre for Computational Evolution
University of Auckland
r.bouckaert@auckland.ac.nz
alexei@cs.auckland.ac.nz
Institute of Evolutionary Biology
University of Edinburgh
a.rambaut@ed.ac.uk
David Geffen School of Medicine
University of California, Los Angeles
msuchard@ucla.edu
Downloads, Help & Resources:
http://beast2.org/
Source code distributed under the GNU Lesser General Public License:
http://github.com/CompEvol/beast2
BEAST developers:
Alex Alekseyenko, Trevor Bedford, Erik Bloomquist, Joseph Heled,
Sebastian Hoehna, Denise Kuehnert, Philippe Lemey, Wai Lok Sibon Li,
Gerton Lunter, Sidney Markowitz, Vladimir Minin, Michael Defoin Platel,
Oliver Pybus, Tim Vaughan, Chieh-Hsi Wu, Walter Xie
Thanks to:
Roald Forsberg, Beth Shapiro and Korbinian Strimmer
--- BEAGLE RESOURCES ---
0 : CPU
Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_SSE VECTOR_NONE THREADING_NONE PROCESSOR_CPU FRAMEWORK_CPU
1 : Tesla V100-SXM2-16GB
Global memory (MB): 16131
Clock speed (Ghz): 1.53
Number of cores: 10240
Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH COMPUTATION_ASYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_NONE THREADING_NONE PROCESSOR_GPU FRAMEWORK_CUDA
2 : Tesla V100-SXM2-16GB
Global memory (MB): 16131
Clock speed (Ghz): 1.53
Number of cores: 10240
Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH COMPUTATION_ASYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_NONE THREADING_NONE PROCESSOR_GPU FRAMEWORK_CUDA
3 : Tesla V100-SXM2-16GB
Global memory (MB): 16131
Clock speed (Ghz): 1.53
Number of cores: 10240
Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH COMPUTATION_ASYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_NONE THREADING_NONE PROCESSOR_GPU FRAMEWORK_CUDA
4 : Tesla V100-SXM2-16GB
Global memory (MB): 16131
Clock speed (Ghz): 1.53
Number of cores: 10240
Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH COMPUTATION_ASYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_NONE THREADING_NONE PROCESSOR_GPU FRAMEWORK_CUDA
-------------------